Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1881 ATGGGAGTAGATTATTACAATATATTGAAGGTGAACAGGAACGCCAATGACGATGATCTCAAGAAGGCGTATAGAAGGTTGGCTATGAAATGGCACCCTGATAAAAACCCCAACAACAAGAAAGAAGCTGAAACCAAATTCAAGCAGATCTCCGAGGCCTATGAGGTGTTGAGTGACCCCCAGAAGAAGGCTATTTATGATCAATATGGTGAAGAAGGGTTGAAAGATATGCCACCACCAGGCAGTGCAAGCTTCCCATTTGGAAACGGTGGCGGCAGCGAGTCAAGCGGGTTTAATCCGAGGAATGCAGAAGATATTTTTGCAGAATTTTTTGGGAGCAGCCCTTTTGGGTTTGGTTCATCAGGACCAGGGAAGTCTATGAGGTACCAGTCAGAGGGAGGAGTTTTTGGGGGATTTGGTGGAAGTGAAAACATTTTCAGAACATATAGTGAAAATGTAACACCAAAGAAACCTCCACCAGTTGAGAGCAAATTGCCCTGCACTCTTGAGGAGCTGTATTCAGGATCAACAAGGAAAATGAAGATTTCAAGAACCGTAGTTGATGCAAACGGTCGGCAAGTCCCCGAGACAGAGATATTGACCATCGACGTGAAACCTGGTTGGAAGAAAGGAACCAAAATCACCTTTCCAGATAAAGGAAATGAACAACCAAACCAACTGCCCGCAGATCTAGTATTTGTTATTGATGAGAAGCCTCATGATGTTTTCAAAAGAGATGGTAATGATATAACTATGAACCATAGGGTAACATTAGCAGAGGCATTGGGTGGAACCACTATAAATATTACCACCCTCGACGGTCGTAACTTATCAATCCCTGTAATAGACATTGTTAGCCCAGGCTACGAGCTCGTGATCGCCAGAGAAGGAATGCCAATCGTTAGAGAGCCTGGTAACCGCGGTGATTTGAAGATCAAATTCGATGTGAAATTCCCAACAAGATTAACCCCCGAGCAACGAGCAGGACTCAAACGTGCTCTGGGAGGTTGA 1011 44.41 MGVDYYNILKVNRNANDDDLKKAYRRLAMKWHPDKNPNNKKEAETKFKQISEAYEVLSDPQKKAIYDQYGEEGLKDMPPPGSASFPFGNGGGSESSGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSMRYQSEGGVFGGFGGSENIFRTYSENVTPKKPPPVESKLPCTLEELYSGSTRKMKISRTVVDANGRQVPETEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVFKRDGNDITMNHRVTLAEALGGTTINITTLDGRNLSIPVIDIVSPGYELVIAREGMPIVREPGNRGDLKIKFDVKFPTRLTPEQRAGLKRALGG 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27716313 27718315 - CaPI482276_05g018810.1 Cam05g1881 127285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1881 336 Gene3D - 239 335 - -
Cam05g1881 336 SMART dnaj_3 3 62 IPR001623 -
Cam05g1881 336 Pfam DnaJ C terminal domain 161 319 IPR002939 -
Cam05g1881 336 Gene3D DnaJ domain 3 121 IPR036869 -
Cam05g1881 336 CDD DnaJ 4 59 IPR001623 -
Cam05g1881 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 IPR051339 GO:0005829(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Cam05g1881 336 Gene3D - 160 238 - -
Cam05g1881 336 SUPERFAMILY Chaperone J-domain 3 118 IPR036869 -
Cam05g1881 336 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cam05g1881 336 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cam05g1881 336 FunFam Dnaj homolog subfamily b member 156 238 - -
Cam05g1881 336 FunFam DNAJ heat shock family protein 239 334 - -
Cam05g1881 336 CDD DnaJ_C 159 322 - -
Cam05g1881 336 Pfam DnaJ domain 4 67 IPR001623 -
Cam05g1881 336 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cam05g1881 336 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cam05g1881 336 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cam05g1881 336 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cam05g1881 336 FunFam DNAJ heat shock family protein 3 123 - -
Cam05g1881 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 160 241 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cam05g1881 336 MobiDBLite consensus disorder prediction 74 99 - -
Cam05g1881 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 328 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1881 K09510 - - csv:101204033 623.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0834 Cam-Chr4:22579407 Cam05g1881 Cam-Chr5:27716313 2.30E-14 dispersed
Cam05g1881 Cam-Chr5:27716313 Cam05g2670 Cam-Chr5:34140771 1.80E-106 dispersed
Cam01g0622 Cam-Chr1:6815705 Cam05g1881 Cam-Chr5:27716313 8.70E-12 transposed
Cam01g2387 Cam-Chr1:35827696 Cam05g1881 Cam-Chr5:27716313 1.50E-116 transposed
Cam02g0252 Cam-Chr2:3394613 Cam05g1881 Cam-Chr5:27716313 5.90E-120 transposed
Cam02g0998 Cam-Chr2:15013810 Cam05g1881 Cam-Chr5:27716313 2.10E-118 transposed
Cam02g1575 Cam-Chr2:28650235 Cam05g1881 Cam-Chr5:27716313 1.20E-12 transposed
Cam02g2388 Cam-Chr2:36374091 Cam05g1881 Cam-Chr5:27716313 4.10E-08 transposed
Cam03g1247 Cam-Chr3:25009924 Cam05g1881 Cam-Chr5:27716313 1.80E-44 transposed
Cam04g0313 Cam-Chr4:11270428 Cam05g1881 Cam-Chr5:27716313 7.10E-06 transposed
Cam04g0477 Cam-Chr4:17947454 Cam05g1881 Cam-Chr5:27716313 7.60E-11 transposed
Cam05g0360 Cam-Chr5:3341955 Cam05g1881 Cam-Chr5:27716313 3.80E-11 transposed
Cam05g2397 Cam-Chr5:31980123 Cam05g1881 Cam-Chr5:27716313 3.30E-46 transposed
Cam09g0525 Cam-Chr9:5332704 Cam05g1881 Cam-Chr5:27716313 1.60E-41 transposed
Cam09g0550 Cam-Chr9:5489942 Cam05g1881 Cam-Chr5:27716313 1.40E-13 transposed
Cam09g1455 Cam-Chr9:22632215 Cam05g1881 Cam-Chr5:27716313 1.70E-44 transposed
Cam10g2171 Cam-Chr10:35189245 Cam05g1881 Cam-Chr5:27716313 1.70E-88 transposed
Cam11g1606 Cam-Chr11:28819031 Cam05g1881 Cam-Chr5:27716313 2.40E-45 transposed
Cam05g1881 Cam-Chr5:27716313 Cam06g1248 Cam-Chr6:23806955 1.50E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g327 Blo01g01767 . . . . Bpe02g00177 . . . . . . . . . . . Bhi04g00826 . . . . . Lcy13g1391 Cla05g01762 Cam05g1881 Cec05g1891 Cco05g1954 Clacu05g1871 Cmu05g1753 Cre05g1881 . . . Cone20ag0610 . . Chy04g00260 . . . . . . . . . . . . . . . . . Cpe02g00377 Bhi09g02424 . . . . . . . . . . . . . . . . Cme04g00291
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007809 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36