Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1899 ATGGTTGTTTCTGTTAAGTTGATGGCTATTATTGTTGGAACTCTCGGTGTCATTTCCTTTATATTTGGAGTCATAGCTGAAAACAAGAAGCCTGCTTCTGGAACTCCCATCCAAGGGAAAGGTATTGTTGTTTGCAAATATCCGGGGGACCCGACGGTGGCCCTGGGATTTCTTTCCTTTCTGTTTCTTCTTGCTTCTTCACTTGCTGGTTACCTCTCTGTGTTCTATCCTTACCAAGGAAAATCCATTCCTCGAGGTGCCTTCTTTAAGACCACTACTTTCTCTGCATTCTTCAACATTGCTCTGTTCACGACTGGATTAGCTATAACTTTTCTGGTATGGCCTACGGTGACGGAGCAATTTCACTTGACTCGCAACGTTCATCTAAATCTCGAGACAGCGTGCCCGACGGCTAAGACCGGTCTTCTGGGTGGCGGTGCATTTCTATCCCTTGATTCGTCCCTCCTCTGGTTGGTTGCTCTGATGCTCGCTGGTAACGCTCGAGAGGACTATTTCGATGAAATAGATGAAAAAGGAACCAGTGCTGGAGGTCTTAAGAGCAGTGCATAA 570 46.14 MVVSVKLMAIIVGTLGVISFIFGVIAENKKPASGTPIQGKGIVVCKYPGDPTVALGFLSFLFLLASSLAGYLSVFYPYQGKSIPRGAFFKTTTFSAFFNIALFTTGLAITFLVWPTVTEQFHLTRNVHLNLETACPTAKTGLLGGGAFLSLDSSLLWLVALMLAGNAREDYFDEIDEKGTSAGGLKSSA 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27946530 27948323 + CaPI482276_05g018990.1 Cam05g1899 127303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1899 189 PANTHER OS07G0462200 PROTEIN-RELATED 10 169 IPR052222 -
Cam05g1899 189 Pfam Protein of unknown function (DUF1218) 59 154 IPR009606 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1899 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1898 Cam-Chr5:27937722 Cam05g1899 Cam-Chr5:27946530 1.10E-85 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g261 . . . . . . . . . . Cma01g01560 . . . . . . . . . . . . . Cla05g01780 Cam05g1899 Cec05g1910 Cco05g1973 Clacu05g1892 Cmu05g1773 Cre05g1901 . . . . . . . . . . . Bda13g01287 . . . . . Cmo01g01607 . Cma09g00501 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001692 4 3 4 4 4 2 0 2 1 2 2 2 3 2 2 6 2 3 0 2 2 1 2 2 2 2 3 3 2 1 70