Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1909 ATGAGCTCGAGCTTCAAAATTCAGGCTCCTCTTCTTCTACCATTCTACTTCCTTTCCTCCGATGCCGAGACTGAAACGAATCATGGACTATTTAGAGGATTTGGAAGAATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGTCCAATGAATCCTCTACAACGAAGAGTCGAGAATCGCCGGGCTTGGTTCCGGTAACTGTGAAACAGATTAGCGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGGCGTTGACATTACAAATGTTACAGTCGTTGGGAAGGTATCAGAGAAAGCTGAAAGGAATACGGACATCACATTCACTATAGATGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAAGCAAATGGAGGAAATACAAGATGGAATGTATGTACGGGTGAATGGGCATTTGAAAATATTTCAAAGTAACAAGCAAATTTTTGCATTCTCCGTAAGGCCTGTAACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACACGACCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGCGAAGGATCAACACAGTTCCAATCCTCAGATTCAACTCTGAAGACTCCAGTGCAGAATGGCTCGAGTGGATATCAGACAGCATCTTCTGGAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAACTGTGATGAATTGGTTCTCGACTATCTGCAGCTGCCCTCCAGCGTTGCAAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATATTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCACTTCAAGTCTGCCGCATAG 924 42.1 MSSSFKIQAPLLLPFYFLSSDAETETNHGLFRGFGRMFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYQTASSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28034986 28041993 - CaPI482276_05g019090.1 Cam05g1909 127313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1909 307 Pfam Replication protein A C terminal 190 300 IPR014892 -
Cam05g1909 307 Pfam OB-fold nucleic acid binding domain 99 172 IPR004365 GO:0003676(InterPro)
Cam05g1909 307 PIRSF RPA32 33 307 IPR014646 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cam05g1909 307 Gene3D - 239 307 IPR036388 -
Cam05g1909 307 PANTHER REPLICATION PROTEIN A-RELATED 46 305 IPR040260 GO:0000724(PANTHER)|GO:0000781(PANTHER)|GO:0003697(PANTHER)|GO:0005662(PANTHER)|GO:0006260(PANTHER)|GO:0006289(PANTHER)|GO:0035861(PANTHER)
Cam05g1909 307 MobiDBLite consensus disorder prediction 48 66 - -
Cam05g1909 307 SUPERFAMILY Winged helix DNA-binding domain 242 305 IPR036390 -
Cam05g1909 307 FunFam replication protein A 32 kDa subunit A-like 61 195 - -
Cam05g1909 307 Gene3D - 65 196 IPR012340 -
Cam05g1909 307 FunFam Replication protein A 32 kDa subunit 238 307 - -
Cam05g1909 307 SUPERFAMILY Nucleic acid-binding proteins 68 194 IPR012340 -
Cam05g1909 307 CDD RPA2_DBD_D 98 191 - -
Cam05g1909 307 MobiDBLite consensus disorder prediction 201 233 - -
Cam05g1909 307 MobiDBLite consensus disorder prediction 48 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1909 K10739 - - csv:101220176 479.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1909 Cam-Chr5:28034986 Cam06g1484 Cam-Chr6:26245136 7.60E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g214 . . . Bda03g00040 . . Bma04g00039 . . . . . Car09g00447 . . . Cpe06g00385 . . . . . . . Cla05g01790 Cam05g1909 Cec05g1920 Cco05g1983 Clacu05g1902 Cmu05g1783 Cre05g1911 . Cone7ag1755 . . Lsi04g02184 Csa03g04392 Chy04g00310 . . . . . . Bpe04g00030 . . Sed05g1650 Cmo01g01597 Cmo09g00511 . . . . . . Bhi09g02337 Tan01g3718 Cmetu04g2121 . Hepe01g2077 Mch11g0615 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009047 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34