Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1910 ATGCAATTTCGTCGGAAGAACAGGTTCTACAGATTTTACAAGGTTAAGTCGGATAAATTGCCGATTCGGCTGGTTACAACTAAATGTTACGCGGGAAAAATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGATGAAGATTACGATGAGTACGACGATTACGATTATTACGATAACGATTTCGATGCAGAAGAAAAAGTAACAGAAAAAACACCTGAGACTAAGGAAGAAAGAAAGGAGCATAAGCTTTGGCGATGCCCGATTTGCACTTACGACAATGAAGACAGTTTTTCTGCCTGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGAAATACTCCTGATGATGGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAATTTTCAAGAGCAGGACGATAAAATTGTGGAAGAAAGAGAAGAGAACATCCACAAGATTGGAAATATCCGGGGCCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCATTTCCGTACTAATATAGTCCCCTTCAAGTTTGACATTCCTTCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCGAAAGTTGGTTTAAAAGCAGTCAGCCACAACAACTTCAACTCTTCAATATTATCTTCAGACATCACCAAGAAATCTGCAAATAATGCAGCATTGACTTCAAAAAGTGCACACAGCTCATCTACTGTATTGCCAACGAGCAAATCAGGCAGTATAGGAGATACACAGTTGAGTACCAAAAGTTCAAACAAATCAGGGATATCAATTGGTAAAAGTACAATGGTTAATGAAGAACATAATACATCAATTAGTGTAACAAAAAATTTACAACCACGTGATAACCGGTCGTCAAGCACTTCCACATCAAAGTCAGCAGGCGAATTTGGCAGCATGGATGAGAGCACCAACCCTTCTGTCGAGCAGGAAAAGCCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACGTCAAATGCGCAGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGACACGCTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGACTGCTGCACCTATTGGGACGTGTATCCCAAAAGGAAATGCACAAATATGAAAAAGAGGCAAAGTCCCTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTTGTGCTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACCTGATATCTGGGGCCACACAAGCTGATGCCGCGGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAGGCTGGTATGGATGGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTACTCCAAAGATCGATATGAATTTATTAAGCTGCAACTTGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTAGTGACTGCCCCTTCTGATGTTCAATTTTTGTCCTGGTATCGTGGACCTAATCTTTTGGAGGCGATTGATTCCCTTCAACCACCCACTCGAGAATTCTGTAAGCCACTGCTTATGCCGATATGTGACGTAGTTAGATCACTTTCACTGGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAATCTGGATCTAAGGTTCTTATCATGCCATCTGGAGATAAAGCAACCGTCCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATAGCAAGAGCGGGGGACAATGTGACTGTTTCTCTACAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGCGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAGACATTTGGAATTGAAGATTCTCACCTTGGAATTTGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCACGTGAAGGAGGCTGCTAAAGTTTCAAGGATAGTGTCATTACTTGATTCCAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGCGATTGAGGTCGTTTTACAAAGCCCAGTTTGTGTTGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGGGTATTTTTGAGAGCGATGGGTAGAACCATAGCTGTCGGCATTGTAACCCAACTAATCGGAGATCCTGAATAA 2457 42.57 MQFRRKNRFYRFYKVKSDKLPIRLVTTKCYAGKMPRKVSHGLDYDEDYDEYDDYDYYDNDFDAEEKVTEKTPETKEERKEHKLWRCPICTYDNEDSFSACDICGVLRNPLVNNRNTPDDGTVENICKDSGVSKMAKSLFASLPNQIPKRAVNFQEQDDKIVEEREENIHKIGNIRGHLHEFHNAFSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAVSHNNFNSSILSSDITKKSANNAALTSKSAHSSSTVLPTSKSGSIGDTQLSTKSSNKSGISIGKSTMVNEEHNTSISVTKNLQPRDNRSSSTSTSKSAGEFGSMDESTNPSVEQEKPQSLAGGLNNMVLNVKSAYANYISGLGKTSNAQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDGSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVQFLSWYRGPNLLEAIDSLQPPTREFCKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVARHLELKILTLEFATPILIGSQLEIHIHHVKEAAKVSRIVSLLDSKTGKVTKKAPRCLSAKQSAAIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28042135 28049472 + CaPI482276_05g019100.1 Cam05g1910 127314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1910 818 Gene3D Translation factors 708 815 - -
Cam05g1910 818 Gene3D Translation factors 615 704 - -
Cam05g1910 818 FunFam Elongation factor 1 alpha-like protein 380 611 - -
Cam05g1910 818 SUPERFAMILY Ran binding protein zinc finger-like 80 107 IPR036443 -
Cam05g1910 818 CDD HBS1-like_II 617 701 - -
Cam05g1910 818 CDD HBS1_C_III 705 813 - -
Cam05g1910 818 FunFam elongation factor 1-alpha isoform X4 708 817 - -
Cam05g1910 818 Pfam Elongation factor Tu domain 2 637 700 IPR004161 GO:0005525(InterPro)
Cam05g1910 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 626 IPR027417 -
Cam05g1910 818 MobiDBLite consensus disorder prediction 248 340 - -
Cam05g1910 818 ProSitePatterns Zinc finger RanBP2-type signature. 84 103 IPR001876 -
Cam05g1910 818 Pfam Elongation factor Tu GTP binding domain 390 609 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam05g1910 818 CDD EF1_alpha 391 610 - -
Cam05g1910 818 PANTHER TRANSLATION FACTOR 388 811 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Cam05g1910 818 Gene3D - 381 611 IPR027417 -
Cam05g1910 818 Pfam GTP-eEF1A C-terminal domain-like 712 811 IPR054696 -
Cam05g1910 818 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 387 618 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam05g1910 818 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 711 814 IPR009001 -
Cam05g1910 818 SUPERFAMILY Translation proteins 609 704 IPR009000 -
Cam05g1910 818 PRINTS GTP-binding elongation factor signature 486 497 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam05g1910 818 PRINTS GTP-binding elongation factor signature 531 540 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam05g1910 818 PRINTS GTP-binding elongation factor signature 391 404 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam05g1910 818 PRINTS GTP-binding elongation factor signature 450 458 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam05g1910 818 PRINTS GTP-binding elongation factor signature 470 480 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam05g1910 818 FunFam Translation elongation factor EF-1 614 704 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1910 Cam-Chr5:28042135 Cam09g2085 Cam-Chr9:35413209 7.90E-76 dispersed
Cam05g1910 Cam-Chr5:28042135 Cam02g2168 Cam-Chr2:34447096 7.90E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1910 K14416 - csv:101219939 1360.13