Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1931 ATGAATAGGGATTGTAATACGGGGCTTCTCCTTGGCCTGGGGCGGGTTTCGTCGGGTGATGATTCCCTGGGTTCCCTCCTACCACCCGAAGTAGCCGATGTGAAGAAGAAGCTCCAGGTTTTGAAGTTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGACTGTTGTAGAGAAGAGCGCCGCCACCGACGAATTAATTCAGCAGGGGTGTTCGGGTAGTCCGGCGTCGTCGTTTTCAAACTCATCGGGGTTTAAAAGAGAGCGAGACGGCGGCGGTGAAGAGAAGGAGGCGGAGGTGTATACGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCCAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAACACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAAACAGTTAAAGCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTCAAATTAACGGCTCCACCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGACCTCAATTTGCAGCGGCGGCGGAGGAGGTGGCGGTGATGCATCTCCGCCCAATACTTTCTCAATTGGATCAAAGCCTCACTTTCTCAAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG 804 47.39 MNRDCNTGLLLGLGRVSSGDDSLGSLLPPEVADVKKKLQVLKFDDILPSLTLGLSTVVEKSAATDELIQQGCSGSPASSFSNSSGFKRERDGGGEEKEAEVYTKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLAKQLKLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCETSICSGGGGGGGDASPPNTFSIGSKPHFLKFPFKHPSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28241392 28242817 + CaPI482276_05g019310.1 Cam05g1931 127335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1931 267 SMART HOX_1 113 175 IPR001356 GO:0003677(InterPro)
Cam05g1931 267 SUPERFAMILY Homeodomain-like 112 179 IPR009057 -
Cam05g1931 267 Coils Coil 170 207 - -
Cam05g1931 267 Pfam Homeobox associated leucine zipper 171 204 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1931 267 MobiDBLite consensus disorder prediction 88 118 - -
Cam05g1931 267 Gene3D - 106 176 - -
Cam05g1931 267 Pfam Homeodomain 115 169 IPR001356 GO:0003677(InterPro)
Cam05g1931 267 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677(InterPro)
Cam05g1931 267 MobiDBLite consensus disorder prediction 69 120 - -
Cam05g1931 267 FunFam Homeobox-leucine zipper protein 18 100 176 - -
Cam05g1931 267 MobiDBLite consensus disorder prediction 69 86 - -
Cam05g1931 267 CDD homeodomain 114 172 IPR001356 GO:0003677(InterPro)
Cam05g1931 267 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam05g1931 267 SMART halz 171 214 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1931 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 72 228 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1931 Cam-Chr5:28241392 Cam10g0817 Cam-Chr10:17342588 1.70E-51 dispersed
Cam05g1931 Cam-Chr5:28241392 Cam10g1725 Cam-Chr10:31297265 1.10E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51973 PF00046 Homeodomain 3.90E-17 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1931 K09338 - csv:101212868 326.25