Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1935 ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATCTGACCGGAATTTCCTCGCCGGTCTTCATCGCCGGTGGGGTCGACTCATTTATCGACTCTTCCTCCATTCACCATTACCTTCCCTCTGCGGCGGATTCCGACGATTTGGACGCGGTGGCGGAAGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGCATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGAGATTCCTGCGATCTCGCTCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACCGGACTCAGCCATGTAAGGATGGATTAGCCTGTCGTCGTCGTGTCTGTTTTTTTGCTCACACGCCGGAACAGCTTCGGGTTGTGCCGCAGCAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGTTCTTCACGAATTGCACACGCACTCGATTCCTATTTTGCTAAAGGGTCATTTGTGACCTCACCCACTTCAATTCTATCAACGCCGCCTGTCTCTCCTCCGTCCGATTCACCACCCCTGTCGCCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCATGTATGCGTAATCTTCAAATTGGGAAATTGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGCACAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAACTTACCGTCAACTCCGACCATCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCGGTAATGGAGAGAGTGGAATCTGGGAGAGACCTTAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTTAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTGTCGGAGCTATTAATGTGA 1047 51.19 MMIGEQSRFNHTIQVPPWDPLEDHHLTGISSPVFIAGGVDSFIDSSSIHHYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKHHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVVPQQSPRTPVSADSVDGSSRIAHALDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIGKLKATPHWGRIQLGHNPLSPSGSGFFNLPSTPTIGNYELWGKNYEEEPVMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28293110 28294156 + CaPI482276_05g019350.1 Cam05g1935 127339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1935 348 PANTHER UNKEMPT FAMILY MEMBER 46 347 IPR045234 -
Cam05g1935 348 SMART c3hfinal6 115 141 IPR000571 GO:0046872(InterPro)
Cam05g1935 348 SMART c3hfinal6 150 173 IPR000571 GO:0046872(InterPro)
Cam05g1935 348 Gene3D - 110 184 - -
Cam05g1935 348 FunFam Zinc finger CCCH domain-containing protein 66 73 141 - -
Cam05g1935 348 ProSiteProfiles Zinc finger C3H1-type profile. 116 142 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1606 Cam-Chr3:31060957 Cam05g1935 Cam-Chr5:28293110 9.60E-93 dispersed
Cam05g1935 Cam-Chr5:28293110 Cam11g0200 Cam-Chr11:3522594 1.00E-85 dispersed
Cam07g0249 Cam-Chr7:3611851 Cam05g1935 Cam-Chr5:28293110 2.60E-58 transposed
Cam05g1935 Cam-Chr5:28293110 Cam08g2154 Cam-Chr8:26966745 1.80E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51975 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1935 - - - 0.0