Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1941 ATGGGAATCTGTATATCCTCTGCATCTTCTCAGATTCGCCATGAAACTAACAAAGTTGGGAGTGTTTTAGAAGAAGATTATTGTAAAAAGTCTTATTGTGTGTGTGGGATTCAGAAACTGGAATCCATTTGTTCCAAGCAAGGGAGGAAAGGAGTCAACCAAGATGCTGCCTTTTCCTATCAAGAGTATGGAGAAGCAGCGGAGAGTTGTTTGTTTGGAGTTTTTGATGGGCATGGACAAAATGGTCATTTTGTGAGCAACATAGTGAAGAATAGATTACCTTCACTGTTGCTTGGGCAGATAACTGGGGAGACAAAGAGTTTTGAATTGTGGAAACAAGCTTTTGAAACTTCCTTCAAGGCCATGGATAAGGAAATCAAAGTTGAAGAGAATTTGGATTGCTCCTATAGCGGATCCACCGCAGTTGTGGTGGTCAAGCAGGGAGATTATTTGGTAATTGGGAATTTGGGGGATTCGAGGGCGGTGATGGGGAGGATCACGGATGATGGAGGAATCAAAGCCATTCAATTAACCACTGATTTGAAGCCTGGATTACCGAGTGAGGGTGAGCGAATAAGGAGGTGCAAAGGGAGGGTGTTGGCGCTGAAAGAAGAGGCGCATATACCCAGAGTGTGGCTGCCCAATGAAGACGCCCCGGGGCTGGCTATGTCCAGAGCTTTTGGAGATTTTGCTCTTAAACATTATGGCATTATTGCTCTCCCCCTTCTCTCCTTCCGCCCTCTTACTTCTCACGATCGTTTTATTATTCTCGCCACTGATGGGATATGGGACGTGCTGAGCAACAATGAAGTAGCGTCCATCGTGTGGGCGGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGGCCGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCGTTTGCCATTTTTTACAAAACCAAAACTGA 957 47.02 MGICISSASSQIRHETNKVGSVLEEDYCKKSYCVCGIQKLESICSKQGRKGVNQDAAFSYQEYGEAAESCLFGVFDGHGQNGHFVSNIVKNRLPSLLLGQITGETKSFELWKQAFETSFKAMDKEIKVEENLDCSYSGSTAVVVVKQGDYLVIGNLGDSRAVMGRITDDGGIKAIQLTTDLKPGLPSEGERIRRCKGRVLALKEEAHIPRVWLPNEDAPGLAMSRAFGDFALKHYGIIALPLLSFRPLTSHDRFIILATDGIWDVLSNNEVASIVWAAESEEAAAKAVVEAAAEAWKRYPSSKHDDCTVVCHFLQNQN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28352637 28354447 - CaPI482276_05g019410.1 Cam05g1941 127345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1941 318 ProSiteProfiles PPM-type phosphatase domain profile. 40 314 IPR001932 -
Cam05g1941 318 PANTHER PROTEIN PHOSPHATASE 42 312 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam05g1941 318 Pfam Protein phosphatase 2C 44 293 IPR001932 -
Cam05g1941 318 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169(InterPro)
Cam05g1941 318 CDD PP2Cc 42 311 IPR001932 -
Cam05g1941 318 SMART PP2C_4 24 312 IPR001932 -
Cam05g1941 318 SUPERFAMILY PP2C-like 41 316 IPR036457 -
Cam05g1941 318 Gene3D - 39 317 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1941 Cam-Chr5:28352637 Cam10g0353 Cam-Chr10:5720285 5.80E-75 dispersed
Cam05g1941 Cam-Chr5:28352637 Cam02g1797 Cam-Chr2:31062390 6.80E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1941 - - - 0.0