Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1951 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGCGGAATTAATGAACACCAGCGATTGAGCGATGCCCGACCTGTTACACGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCGTCGTCTTCTGGGTCTTCCTCGTCTTTGTCTATGGCGTCTTCCACTACAATGGGGAGAATGGAGGCTGTTGAATCCGTCGTTGATCCGGCGGCTCCTGGGGATGTCGTGGGCGGTGGGTGCGTGGATTTCAATGCCTTGGAAGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGTGCTTCCGATCCTGATTCCAGACAAGACACTGAATCCGCTCAGATCGATGCTGCTAAGCGGATGAGTCTTGGCTGTTCGCCTACAGTCTCCGGCAGTAAAGCCCTCGCTGAATTTCTCTCCCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTGCAAACTCTAGCACTCGAGGAAAGATGCCACTGTTAGTTGATCTTAAAGAAATATGTGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAATATGGCTTCATTTTAAGTGGTCTGGTTCAAAAAATTGCTGATATCGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCCGAAGAAATGTTGAGAAGGTGGACCCGCAGGAGTTATGAGATGCGTAGTTCCCTGAACACTATTATTCTACCACTTGGACGTCTAGATATCGGACTTGCACGTCATAGAGCCTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCTGTCAATTTTCGAATTATGGCTTTGATAGGAGGCCCGCAGATGTTATAGAAGTTCCTGAAGATACACCAGTATTACAAAATGAAGAATCTGAATCAGTATCAATTTCATCTACTCAAGATGGAGTAGCAAATGTTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAACGTTAGGAACTTTATTGAAGAAATTCAAACTGGGAGTCCTGATTATGATTTTACGAAGCTTCTAGAATCAGAAAACAGTGTGTATGATAGTTCATTGGGTGCATGTGCACAGTCCGCATCTGCACAGAAGAAGAAAGTGAAAAAAGTGTCAAAGTATGTCATAAGTGCTGCAAAAAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGACTCACAGGATAATGGTGAAAGCAAAGCGACTTTTCAAATGTATCCAATCAACGGAAAGGGCATTGATGTTGGTCTTCATAGCCACCCCTATAGTTTAGCAAACCACGGACAGTCTTCTGCTACTTCTACCGAAACAGAGTATTTAAACAATGCTGTCCGTGAAAATAAGCAGAAAGTGTCTGCCGAGGGATCATCTGAAGAACAAATGCCTGATATAAATGCAAACAAGCACAGTATTTTTTGGCCTCACAGTATGAAAAACGAGGGCTTTGTGTTTGTTGATGCTAATGGGGAAACAGGAAAATTGGTCGATGTTAATGGAACTTTTCATCGTGAACATGTGGATGGTGTTTCATTGACATCTGATGCCGACTCTCATAAAAGACTAGGAACTGCCTTAGTGAGTGAAGAAAGAAGATTGTTACAAGATACTAGTGGTGGAAATCTTCAGTGCTTTGATTTGCGTGAAAATCCGCATGAAAATTTGTTAGAAATTGATAATAGTAAACTGCATGCTAGTGATGACCACAGTGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTCCACATTGGTGAACGTATTGGTATTGGGTCATATGGTGAGGTTTATCGAGCAGACTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGATCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGGCTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACCGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAACTCTCAACTAGATGAAAGGAGACGCTTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATAGTTCATAGAGATCTGAAGTCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAATACATTTCTGTCTTCGAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAACGAACCAGCCAATGAAAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGTTAACGACTTGCCGGATACCATGGAAAGGTTTGAATCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAGATTCCAGAAGATGTTGATCCAGCAGTTTCACAGATCATTTGCGATTGTTGGCAAACGGACTCGCAATTGAGGCCGTCATTCTCTCAGCTTATTACTCGATTGCGGCGCCTTCAGCGGCTTGTTCGGAAAACATGCTCCGTGAATCAAATATCGGAGTGA 2913 42.71 MSKMKHLLRKLHIGGGINEHQRLSDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMASSTTMGRMEAVESVVDPAAPGDVVGGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPTVSGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTRRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPADVIEVPEDTPVLQNEESESVSISSTQDGVANVCNLISKEASDLDAQSKENVRNFIEEIQTGSPDYDFTKLLESENSVYDSSLGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNGESKATFQMYPINGKGIDVGLHSHPYSLANHGQSSATSTETEYLNNAVRENKQKVSAEGSSEEQMPDINANKHSIFWPHSMKNEGFVFVDANGETGKLVDVNGTFHREHVDGVSLTSDADSHKRLGTALVSEERRLLQDTSGGNLQCFDLRENPHENLLEIDNSKLHASDDHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVSQIICDCWQTDSQLRPSFSQLITRLRRLQRLVRKTCSVNQISE 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28405675 28414311 - CaPI482276_05g019510.1 Cam05g1951 127355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1951 970 PRINTS Tyrosine kinase catalytic domain signature 813 831 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 PRINTS Tyrosine kinase catalytic domain signature 923 945 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 PRINTS Tyrosine kinase catalytic domain signature 774 787 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 PRINTS Tyrosine kinase catalytic domain signature 879 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 PRINTS Tyrosine kinase catalytic domain signature 860 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 Gene3D Phosphorylase Kinase; domain 1 693 777 - -
Cam05g1951 970 CDD STKc_MAP3K-like 706 949 - -
Cam05g1951 970 MobiDBLite consensus disorder prediction 44 68 - -
Cam05g1951 970 Gene3D Transferase(Phosphotransferase) domain 1 779 965 - -
Cam05g1951 970 SUPERFAMILY Protein kinase-like (PK-like) 677 950 IPR011009 -
Cam05g1951 970 FunFam Serine/threonine-protein kinase isoform 1 691 778 - -
Cam05g1951 970 FunFam Serine/threonine-protein kinase CTR1 779 962 - -
Cam05g1951 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 MobiDBLite consensus disorder prediction 12 68 - -
Cam05g1951 970 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524(InterPro)
Cam05g1951 970 SMART serkin_6 700 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 PANTHER SERINE-THREONINE PROTEIN KINASE 38 955 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cam05g1951 970 Pfam Protein tyrosine and serine/threonine kinase 700 952 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 ProSiteProfiles Protein kinase domain profile. 700 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1951 970 Pfam Ethylene-responsive protein kinase Le-CTR1 144 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1842 Cam-Chr2:31469777 Cam05g1951 Cam-Chr5:28405675 3.30E-73 dispersed
Cam03g1644 Cam-Chr3:31524813 Cam05g1951 Cam-Chr5:28405675 8.30E-192 dispersed
Cam04g1097 Cam-Chr4:25112975 Cam05g1951 Cam-Chr5:28405675 1.00E-189 dispersed
Cam05g1951 Cam-Chr5:28405675 Cam11g1485 Cam-Chr11:27592838 1.10E-113 dispersed
Cam10g0432 Cam-Chr10:6692502 Cam05g1951 Cam-Chr5:28405675 1.40E-22 dispersed
Cam05g1951 Cam-Chr5:28405675 Cam10g1900 Cam-Chr10:33075448 5.40E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85205 PF07714 PK_Tyr_Ser-Thr 4.20E-65 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1951 K04424 - csv:101214554 1713.35