Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1960 ATGATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTGCCACAACCGCCACTACCACTATCACTACCCCCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTTTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCCTTAAATCCTCAAAACCCTAACAATCCTACTTCTATCGGGTTCGGTTTACCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATGAATGATAATAATAATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGACTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA 1245 43.05 MMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPQPPLPLSLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPGPGQLFASCPAWEMNDNNNNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTCWRS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28475612 28477497 - CaPI482276_05g019600.1 Cam05g1960 127364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1960 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Cam05g1960 414 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 196 235 - -
Cam05g1960 414 Gene3D Classic Zinc Finger 163 232 - -
Cam05g1960 414 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Cam05g1960 414 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 169 193 - -
Cam05g1960 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 374 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam05g1960 414 MobiDBLite consensus disorder prediction 49 69 - -
Cam05g1960 414 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Cam05g1960 414 FunFam protein indeterminate-domain 12-like 73 141 - -
Cam05g1960 414 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 131 165 - -
Cam05g1960 414 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Cam05g1960 414 Gene3D Classic Zinc Finger 90 117 - -
Cam05g1960 414 MobiDBLite consensus disorder prediction 29 48 - -
Cam05g1960 414 MobiDBLite consensus disorder prediction 386 414 - -
Cam05g1960 414 SMART c2h2final6 170 190 IPR013087 -
Cam05g1960 414 SMART c2h2final6 94 116 IPR013087 -
Cam05g1960 414 MobiDBLite consensus disorder prediction 29 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1960 Cam-Chr5:28475612 Cam09g0719 Cam-Chr9:7185356 1.00E-84 dispersed
Cam05g1960 Cam-Chr5:28475612 Cam09g0065 Cam-Chr9:1533192 2.70E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51977 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1960 K25870 - csv:101215280 615.92