Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1966 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACCATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAGGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTTGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCACCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 47.16 MGGSGKWMKVFIGQRKSEKEDHEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28517486 28519293 - CaPI482276_05g019660.1 Cam05g1966 127370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1966 445 MobiDBLite consensus disorder prediction 307 326 - -
Cam05g1966 445 MobiDBLite consensus disorder prediction 12 30 - -
Cam05g1966 445 ProSiteProfiles IQ motif profile. 90 118 - -
Cam05g1966 445 FunFam IQ-domain 11 89 140 - -
Cam05g1966 445 ProSiteProfiles IQ motif profile. 114 141 - -
Cam05g1966 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Cam05g1966 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Cam05g1966 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
Cam05g1966 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Cam05g1966 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Cam05g1966 445 MobiDBLite consensus disorder prediction 410 424 - -
Cam05g1966 445 MobiDBLite consensus disorder prediction 12 31 - -
Cam05g1966 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1966 Cam-Chr5:28517486 Cam09g2081 Cam-Chr9:35375784 2.30E-29 dispersed
Cam01g1497 Cam-Chr1:28512445 Cam05g1966 Cam-Chr5:28517486 1.30E-11 transposed
Cam03g1240 Cam-Chr3:24925706 Cam05g1966 Cam-Chr5:28517486 1.00E-41 transposed
Cam05g1966 Cam-Chr5:28517486 Cam09g0070 Cam-Chr9:1566597 6.60E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1966 - - - 0.0