Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1966 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACCATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAGGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTTGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCACCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 47.16 MGGSGKWMKVFIGQRKSEKEDHEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28517486 28519293 - CaPI482276_05g019660.1 Cam05g1966 127370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1966 445 MobiDBLite consensus disorder prediction 307 326 - -
Cam05g1966 445 MobiDBLite consensus disorder prediction 12 30 - -
Cam05g1966 445 ProSiteProfiles IQ motif profile. 90 118 - -
Cam05g1966 445 FunFam IQ-domain 11 89 140 - -
Cam05g1966 445 ProSiteProfiles IQ motif profile. 114 141 - -
Cam05g1966 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Cam05g1966 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Cam05g1966 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
Cam05g1966 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Cam05g1966 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Cam05g1966 445 MobiDBLite consensus disorder prediction 410 424 - -
Cam05g1966 445 MobiDBLite consensus disorder prediction 12 31 - -
Cam05g1966 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1966 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1966 Cam-Chr5:28517486 Cam09g2081 Cam-Chr9:35375784 2.30E-29 dispersed
Cam01g1497 Cam-Chr1:28512445 Cam05g1966 Cam-Chr5:28517486 1.30E-11 transposed
Cam03g1240 Cam-Chr3:24925706 Cam05g1966 Cam-Chr5:28517486 1.00E-41 transposed
Cam05g1966 Cam-Chr5:28517486 Cam09g0070 Cam-Chr9:1566597 6.60E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g2081 . 1 479 IQD Protein Family AT3G52290 54.2 2.3e-103 372.9
Cam03g1240 . 50 457 IQD Protein Family AT3G22190 57.8 3.2e-97 352.4
Cam05g1966 . 1 438 IQD Protein Family AT2G26180 61.8 9.1e-121 430.6
Cam01g2409 . 50 323 IQD Protein Family AT2G33990 52.5 2.5e-63 239.2
Cam07g1020 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cam01g2409 . 50 271 IQD Protein Family AT3G15050 50.9 1.9e-55 213.0
Cam07g1020 . 112 285 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cam01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 8.1e-75 278.1
Cam06g0278 . 1 509 IQD Protein Family AT4G00820 50.9 2.4e-113 406.4
Cam09g0023 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39