Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1984 ATGAGCCTGGATGCAGCAGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACTGCTCTTTATCCTGTTGTTCTTTTGAAAACTCGACTTCAGGTTTCAGCTACCAAGGTATCATGCTTTAAAATGTCATACTCTATCATGCGTCATGAAGGCTTGAGAGGGTTTTACAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGCGTTGGAAGTGCAACGATTAAGCTAGGCTTTTCAGACACCACAGCCATTGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCAGCCATGGCTGCACAATTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAGCGTTTCTAATCTTAATTCTTGCGTCTATAAAAATGGTATTGACGCTTTTAGAAAGATCATTTATGCTGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCAATATTGACATATGCTCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTTGCTCACAGACTCATTTGGAGTGGTCTAGGCTACTACACAAGTAAGAAGGATGAAGGTTGTATTAATGGTGGCTATGGCTTTAAATCAGATTCTAAGGCAACGGTGGCAGTTCAGGGGTTGAGTGCAGCCTTGGCCAGTGGAGTTTCTGCTATCATAACAATGCCTCTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGCCAAAGACGCCCTCTAACAGCATTGCAGACCATAAGGAACTTGATTAAGGAAGGTGGACTGAATGCTTGTTACAGAGGGCTTGGTCCAAGGTGGGCTTCAATGGCCATGTCGGCGACCACCATGATCACAACCTATGAGTTTCTCAAACGACTGTCTACTAAGAACCAAGATTGTTTGAGCAGATGA 1053 42.74 MSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPVVLLKTRLQVSATKVSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIKLGFSDTTAIAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYYTSKKDEGCINGGYGFKSDSKATVAVQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLIKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSTKNQDCLSR 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28661642 28662694 + CaPI482276_05g019840.1 Cam05g1984 127388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1984 350 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Cam05g1984 350 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Cam05g1984 350 Pfam Mitochondrial carrier protein 250 343 IPR018108 -
Cam05g1984 350 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
Cam05g1984 350 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085(InterPro)
Cam05g1984 350 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
Cam05g1984 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 340 IPR018108 -
Cam05g1984 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cam05g1984 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 221 IPR018108 -
Cam05g1984 350 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 6 346 - -
Cam05g1984 350 SUPERFAMILY Mitochondrial carrier 23 337 IPR023395 -
Cam05g1984 350 Gene3D Mitochondrial carrier domain 28 348 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1984 Cam-Chr5:28661642 Cam11g0513 Cam-Chr11:6559526 9.20E-66 dispersed
Cam05g1984 Cam-Chr5:28661642 Cam08g2182 Cam-Chr8:27184386 2.80E-14 wgd
Cam05g1984 Cam-Chr5:28661642 Cam09g0080 Cam-Chr9:1669681 4.60E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1984 K15121 - csv:101213436 640.958