Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1988 ATGGAAGCGCTGTTGAAGATGAAGAGCGCCTTGATCGGACCGGGGAGGTCGGGGCTTGGTGATTGGGTGCCGTCGTCGTCCCCGTCTGCTCATTGCCATTTCTCTGGCGTTACGTGCGATGGTGATAGTAGAGTTGTTGCGCTTAACGTCTCGAATCTCCGTCTATTTGGTCCAATTCCGCCGGAAATTGGGATGTTGGAGAAGATTGAGAACTTGACCTTAGTGAGTAATAATCTCACCGGAGGGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAATTTCTTAACCTATCTAACAACGCATTTGGTGTTAATTTAGCGGCGGAAATCACGTTAGGAATGACGGAACTCGAGGTTTTCGATATATATAACAATAATTTCTCTTGTCCACTACCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGCGGATCCTACTTTAATGGTCAGATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTGCGGGGAAATACGCTTTCCGGAAGGATTCCGGCGAGTTTGGCGCGGTTAAAGAATCTTAAATACCTTTACGCCGGATATTTTAATCATTACGATGGCGGAATTCCGGCCGAGTTTGGATCGTTGAGTTCCCTGGAGCTTATCGATTTAGCCAACTGTAACCTCACCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTTTATTTCTTCAAGTAAACAATCTTACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTTACCGGAGAGATACCGTCGAGTTTCGTGGCGCTGCAGAACCTTACGCTGATCAATTTGTTCAGCAACAAACTTCATGGTCCAATTCCTAGTTTCGTCGGTGATTTTCCACATCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTCGAACTCCCTGAGAATCTCGGGCGTAACGGAAAGTTGTTTCTGCTCGACGTGGCGACAAATCATTTAACTGGGCTTATTCCTCCGGATTTATGTAACGGTAGGTTGAAGATTTTGATTCTGTTGGATAATTACTTTTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGTAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCTACTCGATATCAGTACTAATTACTTTTCCGGCGCCCTTCCATCGCAAATGTCAGGGGAGTTTCTTGGAACTCTGCAGCTGAATAACAACAATATAACCGGGGAAATCCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCAACGGGAAATTGCCTGTGGAAATATTTGAATTGAGCAAGTTGCTGAGGATTAACATCAGCTTTAACAATATTAGCGGCGAGATCCCGCATTCGGTCGTTCATTGCACCTCTCTAACGTCAATTGATCTCAGTAAAAATGATCTTGTCGGCACAATTCCAAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCTTCAATTTGTCAAGAAATCACTTGACGGGCCAAATTCCGAATGAGATTCGGTCGATGATGAGCCTAACAACTCTGGATTTGTCATACAACAATTTTTTCGGTAGAATCCCCACCGGCGGTCAGTTTTCGGTATTCAACGGCAGCGCTTTCGTCGGAAACCCTAACCTCTGCTTCCCCCATGGGCCTTGTGCATCAATGCACAGGAATTTGAGATCTGTTAAACTAATCATCCCAATCGTTGCGATATTCATCGCTCTATTATGCGCACTCGCTGCATTTTATCTACGGAAGAGAAAGAGGATTCAGAAGTCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTGAACTTCAAAGCAGAGGACGTCCTTGAGTGTTTGAAGGAGGATAATATCATCGGCAAAGGCGGTGCCGGGGTCGTCTACCGTGGATCAATGCCAGACGGCTCCGTCGTGGCGATTAAACTATTGTTAGGAAGCGGCCGGAATGACCACGGTTTCTCGGCCGAAATTCAGACTCTAGGGCGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGGGATACGAATCTGCTGCTGTACGAATACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCACTGGGACTTACGGTACAAGATCGCAATGGAAGCCGCCAAGGGGCTCTGTTACTTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATCCTACTCGATAAGCTGTTTGAGGCACATGTTTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTACGGTTACATCGCTCCAGAATACGCCTACACTCTTAAAGTGGACGAGAAAAGCGACGTGTACAGTTTCGGTGTGGTACTGCTGGAGCTTATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTCAGGTGGGTCCTCAAAACCACATCAGAACTCTCTCAACCGTCGGATGCAGCCTCAGTATTAGCTGTGGTGGACTCGCGCCTCACAGAATACCCTCTCCAAGGTGTAATCCATCTCTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAGGTTGTCCACATGCTCTCCAATCCTCCCAGGTCTGCCCCTACTCTCATCAACCTCTAA 2820 47.73 MEALLKMKSALIGPGRSGLGDWVPSSSPSAHCHFSGVTCDGDSRVVALNVSNLRLFGPIPPEIGMLEKIENLTLVSNNLTGGLPLEMAKLTSLKFLNLSNNAFGVNLAAEITLGMTELEVFDIYNNNFSCPLPVEFVKLKKLKHLDLGGSYFNGQIPAVYSEMQSLEFLSVRGNTLSGRIPASLARLKNLKYLYAGYFNHYDGGIPAEFGSLSSLELIDLANCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPPELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFSNKLHGPIPSFVGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKILILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISTNYFSGALPSQMSGEFLGTLQLNNNNITGEIPAAIKNLKNLQVVSLEHNQFNGKLPVEIFELSKLLRINISFNNISGEIPHSVVHCTSLTSIDLSKNDLVGTIPRGISKLKILSVFNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGRIPTGGQFSVFNGSAFVGNPNLCFPHGPCASMHRNLRSVKLIIPIVAIFIALLCALAAFYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEDNIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28696874 28701532 + CaPI482276_05g019880.1 Cam05g1988 127392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1988 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1988 939 Pfam Leucine rich repeat N-terminal domain 2 40 IPR013210 -
Cam05g1988 939 Pfam Protein kinase domain 655 924 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1988 939 Gene3D Phosphorylase Kinase; domain 1 618 727 - -
Cam05g1988 939 Gene3D Ribonuclease Inhibitor 199 303 IPR032675 -
Cam05g1988 939 Gene3D Ribonuclease Inhibitor 112 198 IPR032675 -
Cam05g1988 939 ProSiteProfiles Protein kinase domain profile. 653 936 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1988 939 Gene3D Ribonuclease Inhibitor 304 596 IPR032675 -
Cam05g1988 939 Gene3D Ribonuclease Inhibitor 1 111 IPR032675 -
Cam05g1988 939 SUPERFAMILY L domain-like 39 353 - -
Cam05g1988 939 SMART serkin_6 653 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1988 939 FunFam LRR receptor-like serine/threonine-protein kinase EFR 305 596 - -
Cam05g1988 939 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 200 304 - -
Cam05g1988 939 Gene3D Transferase(Phosphotransferase) domain 1 728 933 - -
Cam05g1988 939 SUPERFAMILY Protein kinase-like (PK-like) 644 926 IPR011009 -
Cam05g1988 939 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 728 937 - -
Cam05g1988 939 SMART LRR_typ_2 308 332 IPR003591 -
Cam05g1988 939 SMART LRR_typ_2 90 114 IPR003591 -
Cam05g1988 939 SMART LRR_typ_2 522 546 IPR003591 -
Cam05g1988 939 SMART LRR_typ_2 450 474 IPR003591 -
Cam05g1988 939 SMART LRR_typ_2 260 284 IPR003591 -
Cam05g1988 939 SMART LRR_typ_2 212 236 IPR003591 -
Cam05g1988 939 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 112 199 - -
Cam05g1988 939 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 927 IPR050647 -
Cam05g1988 939 SUPERFAMILY L domain-like 349 592 - -
Cam05g1988 939 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Cam05g1988 939 Pfam Leucine Rich Repeat 262 282 IPR001611 GO:0005515(InterPro)
Cam05g1988 939 Pfam Leucine Rich Repeat 431 450 IPR001611 GO:0005515(InterPro)
Cam05g1988 939 Pfam Leucine Rich Repeat 238 260 IPR001611 GO:0005515(InterPro)
Cam05g1988 939 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515(InterPro)
Cam05g1988 939 Pfam Leucine rich repeat 500 559 IPR001611 GO:0005515(InterPro)
Cam05g1988 939 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 622 727 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0049 Cam-Chr4:1454754 Cam05g1988 Cam-Chr5:28696874 1.60E-06 dispersed
Cam05g1988 Cam-Chr5:28696874 Cam10g0790 Cam-Chr10:15046422 2.80E-08 dispersed
Cam05g1988 Cam-Chr5:28696874 Cam01g1846 Cam-Chr1:31977690 1.20E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85207 PF00069 Pkinase 1.60E-42 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1988 - - - 0.0