Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1992 ATGGGTTCAACACAATTTTCATTTCTATTATATCTTCTTACAATCCAAATTTCAGTATCAGGAGTATTTTCCACCACTTTCAGCATAGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTCCACCACTTCCCACCACAGGCTTCGTCCTTGCCGCCGGCGAGTCCAAAACAATCTCCGCTCCGGCATCTTGGGGTGGCCGATTCTGGGGCCGAACTCGCTGTTCAGAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGATTGCGGCTCCAACAAGGTCGAGTGCAGTGGAAACGGCGCGAAGCCACCGGCAACTCTGGCGGAGTTCACCCTTGACGGTGCCGGCGGGTTGGACTTCTTCGACGTGAGTTTGGTCGACGGTTACAATATCCCTATGCTGGTGGTCCCACAAGGTGGCACCGGCGAGAAATGCGTGAGCACGGGATGCGTTGTGGATTTGAACGGCGCGTGTCCTCAAGAACTCAAGGTTATGAGCGTTGACGGCGGAGATAACGTCGCGTGTAAAAGCGCGTGCGAAGCATTTAACCAACCGCAATTCTGTTGCAGTGGCGAGTACGCGACTCCCGATACTTGTAAACCTTCTGCGTACTCGCAGGTGTTCAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGACACGACTAGCACGTTTACATGTGCCGACGCTGATTATATTATAACATTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACAACACAAACGCGCCGGCGATCAACGGCGGAAACGGTACAATGGTTTACGAAGGGGCTGAGTATGATCTAAGCGGCGCGTCGAGAACAACGCTCCGCCAATTTCTTGGGGTAGTCGTTGCCGCCGTGGCAATTCTTCAAATTCAGCAACTCGTTTGA 933 51.98 MGSTQFSFLLYLLTIQISVSGVFSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESKTISAPASWGGRFWGRTRCSEDSTGKFSCLTGDCGSNKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPQELKVMSVDGGDNVACKSACEAFNQPQFCCSGEYATPDTCKPSAYSQVFKNACPRAYSYAYDDTTSTFTCADADYIITFCPSPNTSQKSTDNHNTNAPAINGGNGTMVYEGAEYDLSGASRTTLRQFLGVVVAAVAILQIQQLV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28726514 28728075 - CaPI482276_05g019920.1 Cam05g1992 127396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1992 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cam05g1992 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cam05g1992 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cam05g1992 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cam05g1992 310 PANTHER OS03G0233200 PROTEIN 9 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cam05g1992 310 SMART tha2 27 247 IPR001938 -
Cam05g1992 310 CDD TLP-PA 26 246 - -
Cam05g1992 310 Gene3D Thaumatin 25 247 IPR037176 -
Cam05g1992 310 Pfam Thaumatin family 31 247 IPR001938 -
Cam05g1992 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cam05g1992 310 PIRSF PR5 1 278 IPR001938 -
Cam05g1992 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Cam05g1992 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1228 Cam-Chr2:24394046 Cam05g1992 Cam-Chr5:28726514 3.50E-98 dispersed
Cam05g1992 Cam-Chr5:28726514 Cam10g0071 Cam-Chr10:2283786 2.10E-93 dispersed
Cam01g2080 Cam-Chr1:33856751 Cam05g1992 Cam-Chr5:28726514 1.70E-33 wgd
Cam05g1992 Cam-Chr5:28726514 Cam08g1895 Cam-Chr8:24923322 1.20E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1992 - - - 0.0