Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2002 ATGTCGGTCGCCGTCGTTGGATCTTTCTCTCCACTAAGATCTCCGACGTGGAGGGACCGCCCTCGTTTCACCATGGCCGTCCGATCCAAACCGGTCTCTGTTTCCCCAATTTTAACTAAGTTTCAGAAAGATTGCGACACCCCTTTGCCAGTATTGCGCCACGTGGCCGATTCAATGGCCAATGATATGCGAGCTGGGCTTGCCGTCGACGGCGGCAGCGATCTCAAAATGATTCTTAGCTATGTCGACACTCTCCCTAGTGGGAATGAGAAAGGGTTATTTTATGCATTGGATCTCGGTGGCACTAATTTCCGAGTGCTTAGAGTTCAATTGGGTGGGAAACAAGAACGTGTTATTTCCACTGAATTTGAACAAGTTTCAATCCCTCAACACCTAATGTTTGCCACATCCCAGGAGCTCTTTGATTTTATTGCTTCTGGTCTGGAAAAATTTTTAGAAAGTGAAGGTGACAAATTCCACCTTTGTCCTGGAAGAAAGAGAGAGATTGGATTCACATTCTCATTCCCTGTGAAACAAACTTCCATTGATTCTGGCATATTAATCAAGTGGACTAAAGGTTTTGCTGTTTCTGGAATGGATGGGAAAGATGTTGTTGATTGTCTAAATGAAGCCATGGAAAGGCGAGGACTAGATATTCGTGTTTCGGCCCTTGTTAACGATGCGGTTGGAACCTTGGCTGGAGCAAGATACTACGACGACGATGTCGTGGCTGCTGTGATTTTAGGTACAGGAACCAATGCCTGTTATATAGAACAAAAGAATGCTATTCCCAAGTTGCAAGGCCCGGCATCTTCTTCAGGGAAAACAATTATCAGCACAGAGTGGGGAGCATATTCAAATGGTCTTCCTCTTAGTGTTTTTGATAGAGAGATGGATGCTGCCAGTATCAATCCAGGGGAGCAGATCTTTGAGAAGACAATAGCTGGAATGTACCTTGGTGAAATTGCTCGTAGAGTGCTTTTGGCAATGGCTGAATTCTCCCCTCTTTTTGGCAAATCCATTCCCGAAAAGTTGTTGAAGCATTTCACCCTCAGCACACCAGATCTATGTGCTATGCAGCAAGATGACTCCAACGACCTCCAAGCTGTCGGATCAATCTTGTACAACGTTTTCGGGGTCGAATCGGATTTAAGTGCGAGAAAAATGGTCGTAGAGGTGTGTGACACGCTTTCCAAGCGAGGAGGGCGATTGGCAGGGGCGGGAATTGTAGGAGTTCTACACAAGATTGAAGATTTTGAAGATGTAAAGTTTGGAAAGAGGAGAGCTGTGGCCATGGATGGAGGATTGTATGAGAATTATCCACAATACAGAAGGTACCTTGAAGAAGGAGTAAGAGAACTTTTGGGGACACAGTTGGCTAACAATGTGTCCATTGAACATACCAAAGATGGCTCTGGCATTGGGGCTGCTCTTTTGGCTGCTTCAAACTCTATTTATACAACATGA 1467 45.19 MSVAVVGSFSPLRSPTWRDRPRFTMAVRSKPVSVSPILTKFQKDCDTPLPVLRHVADSMANDMRAGLAVDGGSDLKMILSYVDTLPSGNEKGLFYALDLGGTNFRVLRVQLGGKQERVISTEFEQVSIPQHLMFATSQELFDFIASGLEKFLESEGDKFHLCPGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGMDGKDVVDCLNEAMERRGLDIRVSALVNDAVGTLAGARYYDDDVVAAVILGTGTNACYIEQKNAIPKLQGPASSSGKTIISTEWGAYSNGLPLSVFDREMDAASINPGEQIFEKTIAGMYLGEIARRVLLAMAEFSPLFGKSIPEKLLKHFTLSTPDLCAMQQDDSNDLQAVGSILYNVFGVESDLSARKMVVEVCDTLSKRGGRLAGAGIVGVLHKIEDFEDVKFGKRRAVAMDGGLYENYPQYRRYLEEGVRELLGTQLANNVSIEHTKDGSGIGAALLAASNSIYTT 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28785147 28787854 - CaPI482276_05g020020.1 Cam05g2002 127406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2002 488 Gene3D - 80 480 - -
Cam05g2002 488 ProSiteProfiles Hexokinase domain profile. 32 481 IPR001312 GO:0001678(InterPro)|GO:0004396(InterPro)|GO:0005524(InterPro)|GO:0005536(InterPro)|GO:0005975(InterPro)
Cam05g2002 488 FunFam Phosphotransferase 80 248 - -
Cam05g2002 488 Gene3D - 58 469 - -
Cam05g2002 488 SUPERFAMILY Actin-like ATPase domain 25 239 IPR043129 -
Cam05g2002 488 CDD NBD_sugar-kinase_HSP70_actin 96 258 - -
Cam05g2002 488 PRINTS Hexokinase family signature 169 194 - -
Cam05g2002 488 PRINTS Hexokinase family signature 390 412 - -
Cam05g2002 488 PRINTS Hexokinase family signature 95 111 - -
Cam05g2002 488 PRINTS Hexokinase family signature 466 482 - -
Cam05g2002 488 PRINTS Hexokinase family signature 221 237 - -
Cam05g2002 488 PRINTS Hexokinase family signature 308 330 - -
Cam05g2002 488 PRINTS Hexokinase family signature 244 258 - -
Cam05g2002 488 SUPERFAMILY Actin-like ATPase domain 241 482 IPR043129 -
Cam05g2002 488 PANTHER HEXOKINASE 35 484 IPR001312 GO:0001678(PANTHER)|GO:0001678(InterPro)|GO:0004340(PANTHER)|GO:0004396(InterPro)|GO:0005524(InterPro)|GO:0005536(InterPro)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0005975(InterPro)|GO:0006006(PANTHER)|GO:0006096(PANTHER)|GO:0008865(PANTHER)|GO:0046835(PANTHER)|GO:0051156(PANTHER)
Cam05g2002 488 Pfam Hexokinase 38 237 IPR022672 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0016773(InterPro)
Cam05g2002 488 ProSitePatterns Hexokinase domain signature. 169 194 IPR019807 GO:0005524(InterPro)|GO:0006096(InterPro)
Cam05g2002 488 Pfam Hexokinase 244 481 IPR022673 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0016773(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2002 K00844 - - csv:101216058 866.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1626 Cam-Chr3:31271199 Cam05g2002 Cam-Chr5:28785147 1.10E-141 dispersed
Cam05g2002 Cam-Chr5:28785147 Cam11g0217 Cam-Chr11:3711193 1.60E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29