Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2005 ATGGCACTCCTAACTAATTCCTCTACTGACCACAAGAAACCCCTCCGTAATAAACGCCGGAAAAAACACCCAACCCCAACACCGCCACCCTCCTCCGCCCAATCCTCATGGGATCATTTCAAGAATCTCATCACCTGCAAACAGGTTGAGGTTTCGAGATCAGTTCAGGAGCCGACGAAACGGTCACCGGCCTACTCCAAATTGGGCTCTTCTTGCAGTTCAATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCATAGAGCCGACAACTCACCGGAAAGCAGCTCCGTCGGACAAGAAACCAGGTTGCTTACTAGAAAACCTGCTAACGGCTCTTCCTCTCGTTCTTTAACCGCGCCGCCACCGCCACCGCCATCCAGAACTAAAACCGCTGCTTCGGCTTCTGCTTCCTACAATTCCTCGTCTTCTAGAGGATTACAATTACGAAAGCTTTCTGGGTGTTACGAATGCCACACCATCGTTGACCCTAGCAGGTACCCAATTCCAAGGAGTTCTCTATGTCCTTGTCCTCAATGTGGAGAGGTCTTCCCTAAGGCTGAAAGCTTAGAGCTTCACCAATTAGTTCGCCACGCTGTTTCGGAATTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAATCAAGCTGGCTGAAAAAGGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAGGATTGCCGTGACGCAGTGAAGACACGTGCGCTCGGAAGCACCAGAAAAAACCCGCGATGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGCCTTGTGGTGTGACCTCGGCTCACGTGGCTCAACCGGCTTGTGCGGCTCGATTCCCGGCTGCGGTGTCTGCAGTGTAATTCGTCATGGATTCCAGTGTAAGCCCGGTGGGCCCCCTGGTGTACGGACCACCGCTAGTAGTGGTAGGGCCCACGATTCGTTTGAATGTGGCGACGGAAGGCGACGTGCGATGTTGGTCTGCCGTGTAATCGCCGGGAGAGTGAAGCGGATCTCGGAGGAGGCTGCGACGGCGACAGCGACGGAGGAGGAGAATCTGTCGATGGTGGCAGCCTCATACGACTCCGTTTCCCGACACGCCGGGATGTACTCCAATCTCGAGGAGTTGATCATTTTCAATCCTAAGGCTATCCTTCCTTGTTTCGTTGTCATCTACGAAGCGCTCCAAACCTAA 1263 52.49 MALLTNSSTDHKKPLRNKRRKKHPTPTPPPSSAQSSWDHFKNLITCKQVEVSRSVQEPTKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKPANGSSSRSLTAPPPPPPSRTKTAASASASYNSSSSRGLQLRKLSGCYECHTIVDPSRYPIPRSSLCPCPQCGEVFPKAESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALWCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGPPGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRISEEAATATATEEENLSMVAASYDSVSRHAGMYSNLEELIIFNPKAILPCFVVIYEALQT 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28810964 28813264 - CaPI482276_05g020050.1 Cam05g2005 127409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2005 420 MobiDBLite consensus disorder prediction 92 120 - -
Cam05g2005 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 206 IPR013087 -
Cam05g2005 420 MobiDBLite consensus disorder prediction 51 71 - -
Cam05g2005 420 SUPERFAMILY ADP-ribosylation 203 416 - -
Cam05g2005 420 ProSitePatterns Zinc finger C2H2 type domain signature. 178 201 IPR013087 -
Cam05g2005 420 MobiDBLite consensus disorder prediction 1 39 - -
Cam05g2005 420 MobiDBLite consensus disorder prediction 89 144 - -
Cam05g2005 420 Gene3D - 202 417 - -
Cam05g2005 420 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0950 Cam-Chr3:12868491 Cam05g2005 Cam-Chr5:28810964 2.80E-85 dispersed
Cam03g0954 Cam-Chr3:12957652 Cam05g2005 Cam-Chr5:28810964 2.10E-29 dispersed
Cam05g2005 Cam-Chr5:28810964 Cam10g0582 Cam-Chr10:8972982 3.70E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51979 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2005 - - - 0.0