Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2018 ATGTCTCTAGTCACTAAACTCCACATCGCCTTTTCTCCCCAATTCACCATCAACAACCTTCAAACTACAATTAAAACTACATCCATTCCCACTCACAACTCCAAGTTTCAATCCAAATCCATTTACATTTCTCACCCTTTGTTGTTTAAACCCGCAATGCAGGGCCATTCACCTCGTTCTCTTCGCTCCTCGATTAAGAGTTCGTTGATCGACCCCGACGGTGGGGCTGTCGTCGAGTTGATTGTGCCTGAGAGTGAAAGGGCCTCGAGGGTTTTGGAGGCTGAGCCATTGCCGAAGGTTAAATTGACCCAGATTGATCTTGAGTGGGTCCATGTCATTAGTGAAGGATGGGCGAGCCCGTTGAGAGGATTCATGAGAGAGGAGGAGTATTTGCAGAGTTTGCATTTCAATTGCCTCAAAATTAAAGACGGGTCTCTTGTAAACATGTCGCTTCCCATTGTTTTGGCCATTAACGACGACGTTAAGGACCAAATTGGGTCTTCGTCCAATGTGGGGTTGCTCGGTCCCAATGGAGATTTGGTTGGTATTCTTCGCAGCATTGAGATATTCAAGCATAATAAGGAAGAGAGAATAGCTAGAACTTGGGGCACAACTGCACCAGGGTTGCCATATGTTGATGAGGTCATTACAAATGCTGGAAACTGGCTTATTGGTGGAGATCTTGAAGTATTAAACCCCATCAAATACAATGATGGACTCGATCATTATAGGCTGTCTCCAAAACAACTTCGGCAAGAGTTCGATAGGCGTCAGGCCGATGCTGTTTTTGCCTTTCAATTGAGGAACCCTGTACATAACGGCCACGCTTTGTTAATGAACGATACACGGAAGCGACTTCTGGACATGGGTTACAAGAATCCAATTCTATTGCTTCATCCTTTGGGAGGTTTCACAAAAGCAGATGATGTGCCATTGGACGTTCGAATGGAACAGCATAGCAAGGTTTTAGAAGATGGAGTCCTTGACCCTGAAACAACCATTGTCTCCATTTTCCCATCGCCAATGCATTACGCTGGTCCAACCGAAGTACAATGGCATGCTAAAGCAAGGATCAATGCAGGTGCAAATTTCTACATTGTTGGTCGAGACCCTGCTGGAATGGGTCACCCAACAGAGAAGAGAGATTTATATGATCCAGACCATGGCAAGAAGGTCTTAAGTATGGCCCCTGGTCTTGAGAAGCTAAACATATTGCCCTTCAAGGTGGCAGCATACGATACTGTGGCAAAGAAAATGGCGTTTTTCGATCCTTCACGTGCAAAAGATTTCCTCTTCATCTCTGGAACAAAGATGCGGACATATGCAAGGACCGGCGAGAACCCTCCCGACGGTTTCATGTGCCCTGGCGGATGGAAGGTGTTGGTAAATTATTACGAGAGCTTGCAGGCAGAAGACGCGTCGCAGCAGCAGCCTGCATTGTCAGTTTAG 1449 46.17 MSLVTKLHIAFSPQFTINNLQTTIKTTSIPTHNSKFQSKSIYISHPLLFKPAMQGHSPRSLRSSIKSSLIDPDGGAVVELIVPESERASRVLEAEPLPKVKLTQIDLEWVHVISEGWASPLRGFMREEEYLQSLHFNCLKIKDGSLVNMSLPIVLAINDDVKDQIGSSSNVGLLGPNGDLVGILRSIEIFKHNKEERIARTWGTTAPGLPYVDEVITNAGNWLIGGDLEVLNPIKYNDGLDHYRLSPKQLRQEFDRRQADAVFAFQLRNPVHNGHALLMNDTRKRLLDMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRAKDFLFISGTKMRTYARTGENPPDGFMCPGGWKVLVNYYESLQAEDASQQQPALSV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28889844 28892260 + CaPI482276_05g020180.1 Cam05g2018 127422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2018 482 FunFam bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 237 470 - -
Cam05g2018 482 Pfam PUA-like domain 70 232 IPR025980 -
Cam05g2018 482 Gene3D HUPs 237 470 IPR014729 -
Cam05g2018 482 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 65 457 - GO:0000103(PANTHER)|GO:0004020(PANTHER)
Cam05g2018 482 NCBIfam sulfate adenylyltransferase 72 462 IPR002650 GO:0000103(InterPro)|GO:0004781(InterPro)
Cam05g2018 482 CDD ATPS 97 464 IPR002650 GO:0000103(InterPro)|GO:0004781(InterPro)
Cam05g2018 482 Gene3D Sulfate adenylyltransferase 68 236 - -
Cam05g2018 482 FunFam ATP sulfurylase 2 68 236 - -
Cam05g2018 482 Pfam ATP-sulfurylase 242 463 IPR024951 GO:0004781(InterPro)
Cam05g2018 482 SUPERFAMILY Nucleotidylyl transferase 242 465 - -
Cam05g2018 482 SUPERFAMILY PUA domain-like 72 236 IPR015947 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2018 K13811 - - csv:101217416 919.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2018 Cam-Chr5:28889844 Cam06g0654 Cam-Chr6:8790911 9.70E-191 transposed
Cam05g2018 Cam-Chr5:28889844 Cam05g0551 Cam-Chr5:4862361 9.70E-191 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1086 Blo01g01591 . Bda01g00494 . Bpe02g00356 . . Bma01g02362 . . Cma01g01965 . Car01g01535 . . . . . . . . . . . . . . . . . . . . Cone17ag1393 Cone20ag0087 Lsi04g01731 Csa03g04268 Chy04g00427 . . . . . . . . . Sed01g2503 Cmo01g02023 . . . . . . Cpe02g00078 Bhi09g02099 Tan01g5005 Cmetu04g0401 . Hepe01g1625 Mch11g0129 . Cla05g01885 Cam05g2018 Cec05g2029 Cco05g2086 Clacu05g2009 Cmu05g1890 Cre05g2013 . . . Cme04g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000781 5 3 3 2 3 3 4 3 3 3 2 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 3 3 2 93