Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2032 ATGAGTAAGGGGCCCCCGCCGGATCCCGTGGCCGTGCTCCGAGGTCATCGGGCCTCTGTCATGGACGTTTCTTTTCATCCATCGGAACCTCTTCTCTTTTCGGGCTCTGCAGATGGTGAGTTGCGTATATGGGACACGGTCCAGCATAGGACGGTATCATCGGCATGGGTGCATAGTGCTGCTCACGGAATTATTAGTGTTGCTTGCAGTCGTTCTATTGGGACAAATAGAGTTGTCAGCCAGGGTAGGGATGGAACTGTAAAGTGCTGGGATATTGATGATAGGGCTCTGTCCAGAGTTCCCTCTGTCACAATCAAGACAAATGCCTATCACTTTTGCAAACTCTCCTTGGTGAAGCAGCCTTCTTCTGATTTTTCAAGCCACCATGATGGTCCTAAGTGTATTAATGATCGAGATGAGAAGCCTGTTGATGCGGAAACTTTGGGCTGCAGTGGAGATAAGGCTCAAGGATTTTCTACTGAGCACGCATGCAGATCAGAAGCTGATGGGCTGAAGTATGTGGCTGTCGCAGGGGAGCGATCTTCAGAGGTTGAAATTTGGGATCTGAATGCTGGGGATAGGTTGCTACGACTCCCTCCAAACTGGGAAGGGGATTGCACAAATATCTCTACCAAGGATAGAGGATTGTGCATGGCAGTTCAAGCCTTTTTACCGTCTAAATCTCAGGGATTCTTAAATGTCTTGTCTGGATACGAGGATGGTTCCATGCTTTGGTGGGATCTTAGGAATCCGGCAATCCCAGTAACATCAGTGAAGTGTCATTTAGAGCCAGTTTTAAGCATTTGCGTTGATGGATCGTGCCATGGTGGTATCTCAGGAGCTGCAGATGACAAAGTTGTGATGTTTAGTTTGGATCATTCCACGGGGACATGCCTGGTGAAGAAAGAAATTACTTTGGAACGGGCTGGGATAGCAAAGGTCTCTATTCGGCCAGATAACAAGATTGCTGCAACTGCTGGCTGGGATCACAGAGTGCGGATATATAATTATCGAAAAGGAAATCCTCTTGCTATATTGAAGTACCATCAGGCCTTGTGTAATGCTGTATCATACTCGGACGACTGTAAGTTAATGGCATCTGCATCAGACGACAGAACTGTGGCACTTTGGGAACTCTATCCTCCTCGAACTTAA 1155 47.45 MSKGPPPDPVAVLRGHRASVMDVSFHPSEPLLFSGSADGELRIWDTVQHRTVSSAWVHSAAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRALSRVPSVTIKTNAYHFCKLSLVKQPSSDFSSHHDGPKCINDRDEKPVDAETLGCSGDKAQGFSTEHACRSEADGLKYVAVAGERSSEVEIWDLNAGDRLLRLPPNWEGDCTNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYEDGSMLWWDLRNPAIPVTSVKCHLEPVLSICVDGSCHGGISGAADDKVVMFSLDHSTGTCLVKKEITLERAGIAKVSIRPDNKIAATAGWDHRVRIYNYRKGNPLAILKYHQALCNAVSYSDDCKLMASASDDRTVALWELYPPRT 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29020180 29024767 - CaPI482276_05g020320.1 Cam05g2032 127436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2032 384 SUPERFAMILY WD40 repeat-like 5 378 IPR036322 GO:0005515(InterPro)
Cam05g2032 384 PANTHER TRANSDUCIN BETA-LIKE 3 7 379 - -
Cam05g2032 384 Gene3D - 1 193 IPR015943 GO:0005515(InterPro)
Cam05g2032 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 Pfam WD domain, G-beta repeat 310 336 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 Pfam WD domain, G-beta repeat 340 377 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 384 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 SMART WD40_4 48 91 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 SMART WD40_4 251 290 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 SMART WD40_4 339 378 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 SMART WD40_4 6 45 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 SMART WD40_4 297 336 IPR001680 GO:0005515(InterPro)
Cam05g2032 384 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Cam05g2032 384 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Cam05g2032 384 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Cam05g2032 384 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Cam05g2032 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Cam05g2032 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 384 - -
Cam05g2032 384 Gene3D - 213 383 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2032 K24770 - - csv:101213197 723.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2032 Cam-Chr5:29020180 Cam09g1781 Cam-Chr9:31854793 3.70E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1053 . . . . . . . . . . Cma01g01949 . Car01g01523 . . . . . . . . . . . . . . . . . . . Cone7ag1864 . . Lsi04g01719 . . . . . . . . . . . Sed01g2508 Cmo01g02010 . . . . . . Cpe02g00090 Bhi09g02120 Tan01g4986 Cmetu02g1305 . Hepe01g1640 Mch11g0142 . Cla05g01896 Cam05g2032 Cec05g2041 Cco05g2097 Clacu05g2024 Cmu05g1904 Cre05g2027 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012184 2 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 29