Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2039 ATGGCTGATGGAGGATCAGTTTCTGGGTCAAGAATGTGGTGTTCAATTCCTGAGAAGCTTCAACTGCATGGCGCCATGTTGGCCTTGCAATTTGGCTATGCTGGCTTCCACGTTGTCTCAAGGGCTGCTCTTAATATGGGCATTAGTAAACTTGTCTTCCTAGTTTATAGGAACATCATTGCCTTTTTGCTTCTACTTCCCTTTGCATATTTCCTCGAAAAGAAGGAGCGCCCTCCCATTACTTTCAATTTTCTCCTTCAGTTCTTCCTCCTTGCCCTTGTTGGAATCACGGCAAACCAAGGGTTCTACTTGCTAGGTTTGGAGAACACGTCACCGACGTTTGCATCAGCTATACAAAACTCTGTTCCGGCCATTACATTCCTCATGGCTGCATTGCTCAGAATAGAAGAAGTGCGACTAAACAGAAAAGATGGTATAGCAAAAGTGATTGGAACGATATGCTGTGTTGCTGGGGCCACAGTGATCACTCTGTACAAAGGTCCAACAATATACAGCCCAGTTCATTCACTACAAACAGCTGCCACCACCACTAGCGCACCCATTTTCGCTTCTCTTGGGGACGCAACCGGGAAAAGCTGGACCCTTGGCTGTGTCTTTTTGATCGGTCATTGCTTGTCTTGGTCTGGATGGCTTGTTTTGCAAGCACCCGTTTTGAAAAAATACCCAGCTCGTCTCTCTGTCACTTCTTATACTTGTTTCTTTGGGATAATCCAATTTGTCATCATCGCTGCCATTGCGGAGCGAGATGTTGAGGCTTGGCTCTTTCACTCCGGTGGTGAAATCTTTAGCGTCCTGTATGCGGGAGTGGTAGCTTCGGGAATTGCTTTCGCAGTGCAGACATGGTGTATTCAAAGAGGTGGGCCAGTGTTCGTTGCTGTTTACCAACCAGTTCAGACTTTGGTTGTCGCTGTCATGGCTTCCTTCGCCTTGGGTGAAGAGTTCTTCTTGGGAGGGATCATCGGGGCGGTATTGATCATCGCCGGCTTATACTTCGTCTTATGGGGCAAAAGCGAAGAGAGAAAATTTGCACTTGAGAAGGCTGCAATCCTCTCCACTCCGGACCACACTAACAACAGAACACCCCCACTCATCAAGCCCTCTATTACTCAGCCACTTCTCATCCACTCATCAAACGACAACGTTTGA 1167 47.39 MADGGSVSGSRMWCSIPEKLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFLVYRNIIAFLLLLPFAYFLEKKERPPITFNFLLQFFLLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAALLRIEEVRLNRKDGIAKVIGTICCVAGATVITLYKGPTIYSPVHSLQTAATTTSAPIFASLGDATGKSWTLGCVFLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGIIQFVIIAAIAERDVEAWLFHSGGEIFSVLYAGVVASGIAFAVQTWCIQRGGPVFVAVYQPVQTLVVAVMASFALGEEFFLGGIIGAVLIIAGLYFVLWGKSEERKFALEKAAILSTPDHTNNRTPPLIKPSITQPLLIHSSNDNV 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29088439 29091225 + CaPI482276_05g020390.1 Cam05g2039 127443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2039 388 PANTHER WAT1-RELATED PROTEIN 25 352 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cam05g2039 388 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
Cam05g2039 388 Pfam EamA-like transporter family 202 340 IPR000620 GO:0016020(InterPro)
Cam05g2039 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 345 - -
Cam05g2039 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2039 Cam-Chr5:29088439 Cam06g1595 Cam-Chr6:27421547 3.80E-105 dispersed
Cam05g2039 Cam-Chr5:29088439 Cam08g1936 Cam-Chr8:25300672 9.60E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2039 - - - 0.0