Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g2040 | ATGGATAAAAAGGCCAGAAACACCACCAACGTTGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCCGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCAATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTTTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTATTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA | 543 | 53.78 | MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVGNWDTLQWCM | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29094288 | 29094830 | - | CaPI482276_05g020400.1 | Cam05g2040 | 127444 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g2040 | 180 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g2040 | 180 | Gene3D | AP2/ERF domain | 33 | 91 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g2040 | 180 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g2040 | 180 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g2040 | 180 | MobiDBLite | consensus disorder prediction | 89 | 131 | - | - | |
Cam05g2040 | 180 | Pfam | AP2 domain | 34 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g2040 | 180 | FunFam | Ethylene-responsive transcription factor 2 | 32 | 91 | - | - | |
Cam05g2040 | 180 | MobiDBLite | consensus disorder prediction | 110 | 131 | - | - | |
Cam05g2040 | 180 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 4 | 127 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cam05g2040 | 180 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cam05g2040 | 180 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677(InterPro) | |
Cam05g2040 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g2040 | 180 | CDD | AP2 | 32 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g0679 | Cam-Chr4:21077689 | Cam05g2040 | Cam-Chr5:29094288 | 1.60E-28 | dispersed | |
Cam05g2040 | Cam-Chr5:29094288 | Cam11g0625 | Cam-Chr11:7791580 | 2.50E-30 | dispersed | |
Cam05g2040 | Cam-Chr5:29094288 | Cam08g1938 | Cam-Chr8:25311245 | 2.40E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51983 | PF00847 | AP2 | 3.00E-15 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g2040 | - | - | - | 0.0 |