Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2040 ATGGATAAAAAGGCCAGAAACACCACCAACGTTGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTCGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCCGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCAATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTTTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTATTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA 543 53.78 MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVGNWDTLQWCM 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29094288 29094830 - CaPI482276_05g020400.1 Cam05g2040 127444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2040 180 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2040 180 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2040 180 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2040 180 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2040 180 MobiDBLite consensus disorder prediction 89 131 - -
Cam05g2040 180 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2040 180 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Cam05g2040 180 MobiDBLite consensus disorder prediction 110 131 - -
Cam05g2040 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 127 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cam05g2040 180 MobiDBLite consensus disorder prediction 1 32 - -
Cam05g2040 180 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
Cam05g2040 180 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2040 180 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0679 Cam-Chr4:21077689 Cam05g2040 Cam-Chr5:29094288 1.60E-28 dispersed
Cam05g2040 Cam-Chr5:29094288 Cam11g0625 Cam-Chr11:7791580 2.50E-30 dispersed
Cam05g2040 Cam-Chr5:29094288 Cam08g1938 Cam-Chr8:25311245 2.40E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51983 PF00847 AP2 3.00E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2040 - - - 0.0