Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2046 ATGGTGGTGCAAGCCCAAGTTGATACCCGATTTCAATTTACCATTGAAGGTAAATCGAAGCCGATTATGTCCAAGCATCTGAGTAATTTGAGCTTTGGAATTGGCTTCGTGAGCATGTCAACTGCATTTTCAGAGGTATCCGATCCTCGTCCTTCAAGACGAGAAGCCCGGGAACACATCCTATCGATGACGAGCGCCTCTCTTGCCGGGTTTTCCCCCCGCCCTTCAATCCGAGAAACCTGTTCTCCATGCACTTCTTTGAACCAGAATCGCATATTCCTCCCCTCCACCACAAGAAAAGATGCGAGGCATTCTATCAGTACCCTTAGAAGTGCTTTTCAACAAGAGCCTGCCCTCGTGTCCTCTGATAATCTCCCTTTCCACGGTTCTTTTGTCAAGCCTATTCAGGAAGTAGGAGGAACCGGAGATGTTGATGAACTTATCCATGGCGTCTCGAGCACTGAACCAGAGCCTAAATCGCAGTTACCGAGCAGGGTTAAAAAGAAGACACAAGAAGATGGGGATAGCCTCGAGAGTAGGTTTAAGCTGCGAAATGGAAGGGAGGTTTTTGAAGAAAAAGCCTACCTCGTTGGTGTAGAGCGGAAAGGAGATGTTGACCAACTTTTTAGCATAGACGAATCTCTGAAAGAACTGGCACAGTTAGCTGACACAGCTGGACTAAAGGTCGTTGGTTCAACATATCAAAAACTAGCTTCTCCAAATCCAAGGACTTACATAGGATCTGGCAAAGTTGCAGAAATCAAGAGTGCAATTCATGCATTAGGTATAGAGACTGTGATATTTGATGATGAGCTTTCAGCTGGGCAACTGAGAAACTTGGAAAAATCATTTGGTGGAGATGTAAGAGTTTGTGATCGCACTGCCCTAATCCTGGACATCTTCAATCAGAGAGCAGCAACACATGAGGCATCTCTACAGGTGGCATTGGCACAAATGGAGTACCAGTTACCTCGACTTACAAAGATGTGGACTCACCTTGAGCGTCAGGCAGGAGGGCAGGTGAAAGGTATGGGTGAGAAACAAATTGAAGTGGATAAGCGTATCTTACGAACACAAATTGGTGTTCTCCGTAAGGAATTAGAGTCTGTCAGGGTGCATCGAAAACTGTACAGAAGCCGACGCTTTTCTGTACCTGTCCCAGTAGTTTCTTTGGTTGGATATACAAATGCTGGAAAGAGTACGCTCTTGAATCAGTTGACTGGAGCTGAAGTCCTTGCGGAGGATCGGTTGTTTGCAACCCTTGATCCAACTACAAGGAGGGTTCAGATGAAGAATGGGAACGAGTTTCTACTTACAGATACTGTTGGTTTCATCCAAAAGTTACCAACTATGCTGGTTGCTGCATTCAGAGCAACATTAGAGGAGATATCAGAATCATCATTGCTGGTTCACGTGGTGGACATCAGCCATCCACTGGCTGAGCAACAGATAGAGGCTGTGGATAAAGTTCTTTCAGAATTGGATGTGTCATCAATTCCGAAGTTGATGGTTTGGAACAAGGTTGACAAGGTTAGTGATCCTCAACATATTAGACTGGAAGCAGATAAAAGAGGAGACGTTGTTTGTGTATCTGCGCTGAGTGGTGATGGTTTGGACGAATTCTGTGATGCAGTTCAGGGCAAATTAAAGGACTCCATGGTTTGGGTAGAAGCCTTGATCCCGTTTGATCGGGGCGAGCTCCTGAGCACTGTGCATCAGGTTGGAATGGTAGAGAAAACTGAATATACAGAAAACGGAACACTGGTCCACGCATACGTTCCCCTCAGCTTGCCCAAATCTTTTACAAAATCAGCTCAAATTTCCCATATTCATCAAACTCCGCCGACTGAAGCTGCATGGTCAACATTTAGAAACTAA 1878 45.37 MVVQAQVDTRFQFTIEGKSKPIMSKHLSNLSFGIGFVSMSTAFSEVSDPRPSRREAREHILSMTSASLAGFSPRPSIRETCSPCTSLNQNRIFLPSTTRKDARHSISTLRSAFQQEPALVSSDNLPFHGSFVKPIQEVGGTGDVDELIHGVSSTEPEPKSQLPSRVKKKTQEDGDSLESRFKLRNGREVFEEKAYLVGVERKGDVDQLFSIDESLKELAQLADTAGLKVVGSTYQKLASPNPRTYIGSGKVAEIKSAIHALGIETVIFDDELSAGQLRNLEKSFGGDVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQAGGQVKGMGEKQIEVDKRILRTQIGVLRKELESVRVHRKLYRSRRFSVPVPVVSLVGYTNAGKSTLLNQLTGAEVLAEDRLFATLDPTTRRVQMKNGNEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMVWNKVDKVSDPQHIRLEADKRGDVVCVSALSGDGLDEFCDAVQGKLKDSMVWVEALIPFDRGELLSTVHQVGMVEKTEYTENGTLVHAYVPLSLPKSFTKSAQISHIHQTPPTEAAWSTFRN 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29134256 29146683 + CaPI482276_05g020460.1 Cam05g2046 127450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2046 625 NCBIfam small GTP-binding protein domain 388 545 IPR005225 GO:0005525(InterPro)
Cam05g2046 625 MobiDBLite consensus disorder prediction 142 177 - -
Cam05g2046 625 Pfam 50S ribosome-binding GTPase 389 507 IPR006073 GO:0005525(InterPro)
Cam05g2046 625 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 387 553 IPR030394 GO:0005525(InterPro)
Cam05g2046 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 559 IPR027417 -
Cam05g2046 625 Gene3D - 305 372 - -
Cam05g2046 625 Gene3D - 386 553 IPR027417 -
Cam05g2046 625 Pfam HflX C-terminal domain 519 588 IPR045498 -
Cam05g2046 625 MobiDBLite consensus disorder prediction 161 177 - -
Cam05g2046 625 PANTHER GTP-BINDING PROTEIN HFLX 161 585 IPR016496 GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0043022(PANTHER)
Cam05g2046 625 NCBIfam GTPase HflX 194 547 IPR016496 GO:0005525(InterPro)
Cam05g2046 625 Pfam GTP-binding GTPase Middle Region 304 381 IPR032305 -
Cam05g2046 625 Hamap GTPase HflX [hflX]. 215 578 IPR016496 GO:0005525(InterPro)
Cam05g2046 625 Pfam GTP-binding GTPase N-terminal 213 301 IPR025121 -
Cam05g2046 625 CDD HflX 346 549 IPR030394 GO:0005525(InterPro)
Cam05g2046 625 PRINTS GTP1/OBG GTP-binding protein family signature 456 474 IPR006073 GO:0005525(InterPro)
Cam05g2046 625 PRINTS GTP1/OBG GTP-binding protein family signature 389 409 IPR006073 GO:0005525(InterPro)
Cam05g2046 625 FunFam GTPase HflX 386 555 - -
Cam05g2046 625 FunFam Predicted protein 206 328 - -
Cam05g2046 625 Gene3D - 205 304 IPR042108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2046 K03665 - - csv:101219907 971.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2046 Cam-Chr5:29134256 Cam07g1006 Cam-Chr7:24302750 3.20E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30