Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2064 ATGCAACATTCACGTGAGGCCGGGCCATGGCTCTATGAGTCTATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAGAGACCACCACAACCAAGTGTGGACCTCACCACAATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAGGGGAACACGGATATTTCGGAGTGAGCGACTACAGAGAAGAATCGTCCATGAGTTCAACGGACGAGAACCGAGAAACGGGAGCCGTGTTTGTGCCTCTGGCTCTCGCCGTGAGAGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGGGGATTCAAGAATCACTTGGATTATTTGTTTCTCTCGTTGTTTTCTCCGCTGCTGTTCTCATTTTTTGCGGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGAAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCTGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCAAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACATTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCATGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1629 48.0 MQHSREAGPWLYESMQLQRTCIRLPTERPPQPSVDLTTINQQKGSTSASHIGEHGYFGVSDYREESSMSSTDENRETGAVFVPLALAVREEEVVTATARRRQRITGDSRITWIICFSRCFLRCCSHFLRKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29312176 29315511 + CaPI482276_05g020640.1 Cam05g2064 127468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2064 542 SUPERFAMILY Tubby C-terminal domain-like 241 542 IPR025659 -
Cam05g2064 542 SUPERFAMILY F-box domain 181 235 IPR036047 GO:0005515(InterPro)
Cam05g2064 542 ProSitePatterns Tub family signature 2. 527 542 IPR018066 -
Cam05g2064 542 MobiDBLite consensus disorder prediction 150 182 - -
Cam05g2064 542 Pfam Tub family 253 537 IPR000007 -
Cam05g2064 542 PRINTS Tubby superfamily signature 372 399 IPR000007 -
Cam05g2064 542 PRINTS Tubby superfamily signature 452 469 IPR000007 -
Cam05g2064 542 PRINTS Tubby superfamily signature 470 486 IPR000007 -
Cam05g2064 542 PRINTS Tubby superfamily signature 324 348 IPR000007 -
Cam05g2064 542 PRINTS Tubby superfamily signature 499 518 IPR000007 -
Cam05g2064 542 PRINTS Tubby superfamily signature 308 324 IPR000007 -
Cam05g2064 542 PRINTS Tubby superfamily signature 520 542 IPR000007 -
Cam05g2064 542 Pfam F-box-like 192 234 IPR001810 GO:0005515(InterPro)
Cam05g2064 542 Gene3D - 186 240 - -
Cam05g2064 542 Gene3D Tubby Protein; Chain A 250 542 IPR025659 -
Cam05g2064 542 PANTHER TUBBY-RELATED 151 541 - -
Cam05g2064 542 CDD F-box_AtTLP-like 192 236 - -
Cam05g2064 542 ProSitePatterns Tub family signature 1. 470 483 IPR018066 -
Cam05g2064 542 MobiDBLite consensus disorder prediction 150 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2064 Cam-Chr5:29312176 Cam08g1140 Cam-Chr8:17745688 1.50E-118 dispersed
Cam05g1157 Cam-Chr5:10798164 Cam05g2064 Cam-Chr5:29312176 8.80E-119 transposed
Cam09g0341 Cam-Chr9:3775370 Cam05g2064 Cam-Chr5:29312176 2.30E-12 transposed
Cam01g2002 Cam-Chr1:33257866 Cam05g2064 Cam-Chr5:29312176 9.00E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51985 PF01167 Tub 3.10E-105 CL0395 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2064 K19600 - csv:101222500 751.125