Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g2138 | ATGGAAATCATTTCACCCCATTTCAATATCACCATACTTGGACTCTTCCTCTTCCTTCTCTCCTCTTTTTTCATTTTGAAAAAGCTAGCCACAGCCTACAAATACAGAGTCCCTCCAGAGGCAGCCGGCGGATGGCCGATCATCGGCCACCTCCGACTGCTACTCGGTCCAAAACTCCCCCACGAAACTTTGGGAGCCATGGCTGACAAATACGGACCAATATTCACCATTCGAGTTGGTATCCACAAAGCTCTGGTTATAAGCAATTGGGAAGTGGCTAAAGAGTGTTATACAACTCTTGATTCACTCATTTCTTCTCGTCCCAAAACTTTAGCTGGCCAATTATTGGGCTACAACTTTGCTGGGTTTGGGTTCAGGCCAAATTACGATTCCTTTTACCGTAACATGAGAAAAATCATAGCCTCGGAGTTGCTTTCGAATCGGCGTTTGGAAAAACAGAGTGAGGTCAGAGTTTGTGAGGTGAAGAAAGCAGTGAAGGAGGTTTATGAATTGTGGATGAAAAAAAGAAAGGATTTGATTTTGGATATGGAAGAATGGATTGGAAATGTGAATTTGAATGTGATTTTGATGATGGTTTGTGGGAAGAGGTTGTTTGGGGAAGATGAGGAGATAATGAGACGGTGCCGGAAAGCGATGAGGGATTTTTTTGATTTGGGTGGGCAGTTTATGGTGGGAGATGCGATTCCATTTGTGAGATGGATGGATTTGGGTGGATATGAGAAGGCTATGAACATTACTTCAAGGGAATTGGATTGTTTTATTAGGGAATGGCTGGAAGAACACCGCCGGAAGAGAGAGTCTGCCCTTGGGGGCGCCGTTGGAGATGGTCAACAGGATTTCATGGATGTGATGCTTTCGATTCTTGAAGGAGGAATGGACCTTGCTGGGTATGATGCTGATACAGTCAACAAAGCTACTTGCATGAGCCTTATTACTGGGGGAAGCGATACAGTGACAGTAACACTAACATGGGCGATCTCGTTTTTACTAAACAACCGAGAGGCATTAAGAAAGATACAAGAGGAGCTAGACATCCATGTTGGAAACAAAAGACTTGTGGATGAATCAGACATAAGCAAATTAGTGTATCTCCAAGCCGTAGTGAAAGAGACGTTAAGGTTGTACCCTGCAGGCCCACTATCGGGGATTCGAGAGTTCAGCCAAGATTGCACTCTAAGAGGGTATCACGTGGCGGCCGGCACACGCCTCATTACTAACCTTTGGAAGATACAGACGGATCCTCGAGTTTGGGCCGAGCCTTTGGAGTTCAAGCCTGAGAGGTTTTTAGGTAGCCAGAAGCAGGTGGATGTTAAGGGCCAGAATTTTGAATTGGGGCCGTTTGGGTATGGAAGAAGGGCTTGTCCTGGGCTTGGGTTTGGAGTTCAAATGACCCAATTGGTGCTGGCCAGTTTCATTCATTCATTTGAAATTGGAACTCCTTCTGATGAACCGGTTGATATGGCGGCTAACTTTGGACTTACCATCCACCGAACCAACCCTCTTCAACTTCTCATCAAGCCTCGTCTTCTAGCAAATGCTTATGCTTGA | 1569 | 45.44 | MEIISPHFNITILGLFLFLLSSFFILKKLATAYKYRVPPEAAGGWPIIGHLRLLLGPKLPHETLGAMADKYGPIFTIRVGIHKALVISNWEVAKECYTTLDSLISSRPKTLAGQLLGYNFAGFGFRPNYDSFYRNMRKIIASELLSNRRLEKQSEVRVCEVKKAVKEVYELWMKKRKDLILDMEEWIGNVNLNVILMMVCGKRLFGEDEEIMRRCRKAMRDFFDLGGQFMVGDAIPFVRWMDLGGYEKAMNITSRELDCFIREWLEEHRRKRESALGGAVGDGQQDFMDVMLSILEGGMDLAGYDADTVNKATCMSLITGGSDTVTVTLTWAISFLLNNREALRKIQEELDIHVGNKRLVDESDISKLVYLQAVVKETLRLYPAGPLSGIREFSQDCTLRGYHVAAGTRLITNLWKIQTDPRVWAEPLEFKPERFLGSQKQVDVKGQNFELGPFGYGRRACPGLGFGVQMTQLVLASFIHSFEIGTPSDEPVDMAANFGLTIHRTNPLQLLIKPRLLANAYA | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 29824200 | 29826074 | - | CaPI482276_05g021380.1 | Cam05g2138 | 127542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g2138 | 522 | CDD | CYP82 | 72 | 515 | - | - | |
| Cam05g2138 | 522 | Pfam | Cytochrome P450 | 43 | 503 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PANTHER | CYTOCHROME P450 82C3-RELATED | 21 | 516 | IPR050651 | - | |
| Cam05g2138 | 522 | Gene3D | Cytochrome P450 | 30 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | FunFam | Cytochrome P450 82C4 | 29 | 513 | - | - | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 451 | 461 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 190 | 208 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 92 | 113 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 68 | 87 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 309 | 326 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 413 | 437 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 372 | 390 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 329 | 355 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | E-class P450 group I signature | 461 | 484 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | SUPERFAMILY | Cytochrome P450 | 44 | 515 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 454 | 463 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cam05g2138 | 522 | PRINTS | P450 superfamily signature | 320 | 337 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | P450 superfamily signature | 373 | 384 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2138 | 522 | PRINTS | P450 superfamily signature | 452 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g2180 | Cam-Chr1:34458311 | Cam05g2138 | Cam-Chr5:29824200 | 4.00E-137 | dispersed | |
| Cam05g2136 | Cam-Chr5:29800913 | Cam05g2138 | Cam-Chr5:29824200 | 4.00E-124 | dispersed | |
| Cam05g2138 | Cam-Chr5:29824200 | Cam05g2141 | Cam-Chr5:29852629 | 2.80E-212 | dispersed | |
| Cam05g2137 | Cam-Chr5:29807769 | Cam05g2138 | Cam-Chr5:29824200 | 6.20E-127 | tandem | |
| Cam05g2138 | Cam-Chr5:29824200 | Cam05g2139 | Cam-Chr5:29829232 | 1.10E-200 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g2138 | - | - | - | 0.0 |