Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2142 ATGAACACACCATCTTCCTTGCCTGACCTCTCCTTGCAGATCAGTCTTCCGATGTCCATGATGTTGACACCGCCGTGTGAGACGAAGGCCAAGCCACGGAGCTCAACCACCACGGATTCGAGTTGTAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTCTTCCGTTTAGGGTTTGAAGTGGGAGATATGGATGTTCTTCCTCGCCGGCGTCATCATAATGTCCGTGGCCGCCGCGACTTCAAAAGAAGCGGTGGTGGTGTCGGGTGTGGAGTAAGAAGAAGCATCAGAGCTCCAAGAATGAGATGGACTACAACTCTACATGCTCATTTTGTACATGCTGTTCAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGATCTAACCCTAGCTCACGTCAAAAGCCATTTACAGATGTACAGAACAGTGAAGAATACTGTGAAGGGAACAGATGATTGTGGAAGGACTGAGATTGAAGAAGATGCCATTGTTTTATCTTCTTCTGTTCAAAAATCTAACTTTCAATCACCTCCTTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAGTTGCGACAGGACCAAGTCAAACGCCGACGCTTTCGCTAAATCTAGAGGAATGAAGGTTGAAGGAAGCAATGGAGATTATCACGAGGCAATCACCATGCAACGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATGGTGATGCAAAAGAGCTTGCCCTTCTCAATTGCTAA 798 44.99 MNTPSSLPDLSLQISLPMSMMLTPPCETKAKPRSSTTTDSSCSGKSDLSHENGLFRLGFEVGDMDVLPRRRHHNVRGRRDFKRSGGGVGCGVRRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRTEIEEDAIVLSSSVQKSNFQSPPLQRIQRSSLVTSMHKSCDRTKSNADAFAKSRGMKVEGSNGDYHEAITMQRINLEFTLGRPSWQLDYGDAKELALLNC 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29858106 29861403 - CaPI482276_05g021420.1 Cam05g2142 127546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2142 265 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 152 IPR006447 GO:0003677(InterPro)
Cam05g2142 265 FunFam Myb family transcription factor 97 155 - -
Cam05g2142 265 SUPERFAMILY Homeodomain-like 96 153 IPR009057 -
Cam05g2142 265 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 3 252 IPR044847 GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cam05g2142 265 MobiDBLite consensus disorder prediction 29 47 - -
Cam05g2142 265 Pfam Myb-like DNA-binding domain 100 151 IPR001005 -
Cam05g2142 265 Gene3D - 98 155 - -
Cam05g2142 265 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2142 Cam-Chr5:29858106 Cam09g1148 Cam-Chr9:12092861 3.60E-30 dispersed
Cam01g2437 Cam-Chr1:36203174 Cam05g2142 Cam-Chr5:29858106 1.90E-18 transposed
Cam11g1679 Cam-Chr11:29477182 Cam05g2142 Cam-Chr5:29858106 2.90E-15 transposed
Cam02g1846 Cam-Chr2:31513208 Cam05g2142 Cam-Chr5:29858106 2.70E-16 transposed
Cam05g2142 Cam-Chr5:29858106 Cam08g2020 Cam-Chr8:25892384 5.20E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51986 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2142 - - - 0.0