Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2147 ATGGTGAAAACAGCAACCAAAAACGAAAAACTCAACAAACTGGGGACCATTCCAATGGGGATCCGCTATATTCGGAAAACAACCATCGGCCACGGCGAAAAAGCCTCTCGAGCACCGAACCGATCAACCCCAGTCCGGTATAAAACCCCGCCGGAGTCCCCATTCATCTTCATCCCTTCCAAACAGCCCTTGGGCGTATCCAAGGTCACTAAGACATTTTCCAGCCCCAGGCTCCGACGGGCTTTCATTGCTCTTCAAGCCTGGAAGCTTGCTATTTATTCAGACCCTTTAAACACCACCGCTGATTGGGTCTGCGCCGATGTCCGCTCCTACACCAGAGTTTTCTGCGCCCCTGCTCTCGACGATCCCAAACTCGAAGTCGTCGTCGGAATTGACCTTAACCATGCTGACATCGCCGGTTACTTGCCCGTCGAGCTCAATTTGCTGACCGACATTGCTCTATTTCACATCAACAACAACAGATTCTGCAGCATTGTCCCATCGAGCTTCTCCAAGCTTACTCTACTCCACGAGCTTGACATTAGCAACAACAGATTTGTAGGGCATTTCCCTAGAGTAGTTGTGAGAATCCCTAATTTGAAATATATGGACATCAAATACAATGATTTCGAAGGCGAATTGCCTCCTAAGCTTTTTACTAAGGAACTAGATGTCATTTTCCTAAACAACAATAGATTCACTTCCTACATTCTTAAAAATTTTGGGGAATCACCGGCATCGGTGATTGTGATTGCCAACAACAATTTTACGGGATGTATTATAATGGACATTTCTTTGAATTTGTTGACTTGCTTTATGCAGGATGAACCCGAGGCACCAGAATCGTCGCCGGTATTAGAGCCCAAGGCACCAACACCTTCCTCTATTGACGATTCTTATGATCTGTCACCGGTCCCAAGATATCGCCCTCCTCCTCCACTTGTAGTGCATTCCCCACCACCACCGGTCCACTCTCCCCCCAATTTCATCATCTCCACCACCAGTTCACTCAGTTTCATCACCCCCACCACCAGTTCCCTCTCCACCACCACAGGGTTTCATCATCCCCACCACCGATTCACTCTCCACCACCATCCGTTTCATCACCCCACCACCAGTTCACTCTCCACCGCCACCAGTTTTCTCGCCTCCCCCACCGGTTTACTCACCACCAGTTTTCTCACCACTGGTGTACGTACTCACCCCCACCATCAGTGCACTCACCTCTACCTCTAG 1236 49.11 MVKTATKNEKLNKLGTIPMGIRYIRKTTIGHGEKASRAPNRSTPVRYKTPPESPFIFIPSKQPLGVSKVTKTFSSPRLRRAFIALQAWKLAIYSDPLNTTADWVCADVRSYTRVFCAPALDDPKLEVVVGIDLNHADIAGYLPVELNLLTDIALFHINNNRFCSIVPSSFSKLTLLHELDISNNRFVGHFPRVVVRIPNLKYMDIKYNDFEGELPPKLFTKELDVIFLNNNRFTSYILKNFGESPASVIVIANNNFTGCIIMDISLNLLTCFMQDEPEAPESSPVLEPKAPTPSSIDDSYDLSPVPRYRPPPPLVVHSPPPPVHSPPNFIISTTSSLSFITPTTSSLSTTTGFHHPHHRFTLHHHPFHHPTTSSLSTATSFLASPTGLLTTSFLTTGVRTHPHHQCTHLYL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29892904 29894561 + CaPI482276_05g021470.1 Cam05g2147 127551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2147 411 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 68 260 IPR051582 -
Cam05g2147 411 FunFam Leucine-rich repeat extensin-like protein 1 82 243 - -
Cam05g2147 411 Gene3D Ribonuclease Inhibitor 82 278 IPR032675 -
Cam05g2147 411 SUPERFAMILY L domain-like 91 266 - -
Cam05g2147 411 MobiDBLite consensus disorder prediction 278 303 - -
Cam05g2147 411 Pfam Leucine rich repeat 156 210 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2147 Cam-Chr5:29892904 Cam06g0355 Cam-Chr6:5672638 3.60E-37 dispersed
Cam05g2147 Cam-Chr5:29892904 Cam06g1139 Cam-Chr6:21748379 4.40E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2147 - - - 0.0