Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g2188 | ATGGGCGAGATTTTTGTATCTGTTTTGGTGTTTTTTCTCACTCTATTATGGTACATTTCTTTAAAGAGAAACAAGAAGGAAGCCATTAAAAATGGAACTAAGCTCCCTCCTGGTTCTTTGGGATGGCCTTATATTGGAGAAACCCTTCAACTCTATTCTCAAGACCCTGAATCTTTCTTTGCCACCAAACAGAAAAGGTATGGGGAGATTTTCAAGACGCATATACTTGGATGTCCTTGTGTGATGTTGGCTAGTCCTGAGGCAGCAAGGTTTGTGCTAATGACACAGGCTCATTTGTTCAAGCCAACTTACCCCAAAAGCAAAGAACTTTTGATTGGCCCCTCTGCTCTGTTTTTTCACCAAGGTGACTACCATTGCCGTCTGAGGAAACTGGTTCAGAACTCTCTTTCTTTGGATGCCATCCGCACCTTAGTCCCCGATATCGACTCCGCCACCGCTTCCGCCCTTGACTCCTGGGCCAGTTCCGTACTCATTAGCACCTTTCATGAGATGAAAAAGATATCATTTGAAGTTGGGATATTGACCATTTTTGGCCATTTGGAAGCGGCTTACAAAGAGGAGCTTAAAAACAACTATAGCATATTGGACGCAGGCTACAATTCTTTTCCCACCAACATTCCCGGAACTCCATACAAAAAGGCACTCTCAGCAAGAAAGCGGCTAAGTAAAATCCTAGGTGACATAATCCATGAGAGAAGAGAAAAAAGACTGGGGGAAAAGGATCTATTGGGAAGCCTTCTAAACTCCATTGATGATGAAGGTGAAGTTAAAATAAGCGATGCCCAAATAGCAGATAACATAATAGGAGTGCTTTTTGCAGCTCAAGACACCACTGCCAGTGTCATGACTTGGATTGTTAAGTACCTCCATGACCAACCTAAGCTTCTTCAATCCGTAAAGGAAGAGCAAGAGGAAATTAAAAAATTAAATTGTGAGAATAATCAAGGGTTGAACTGGGTTCAGACAAGAAACATGCCAATGAGTTACAAGGTGGTATTGGAGAGCTTAAGGATGGCGAGCATTATATCGTTCACTTTTAGAGAGGCTGTAGCTGATGTGGAATACAAAGGATACTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTGTTCAGAAACATCCATCATAGTCCAGAATATTTCCCCGATCCTCACAATTTCGACCCTTCTAGATTTGAGGTTGCACGAAAACCCAATACATTTATGCCATTTGGCAGTGGAGTTCATGCCTGCCCAGGAAATGAACTTGCAAAGCTGGAGATGTTGATCATGATTCATCATCTAGTAACCAAGTTCAGTTGGCAGGTGGGAATTGGTTGGTACGCAAAACAGGGTTCAACACAGTCCATTTCCCGTTCCCTTGCAAGGCCTTCCAGCCAGATTTTGGAAGATAGGCCATTAGAAAACTGTACACGAGAATATGAGCCCGCACTAAGTGGGCCGATTTGCCATCAATTCAAAGCCCAGTCCAAACCCAAGCCCATGCCCAAGCCCAATCATTTTCTTGTCCTTCCCAACTTACCCCTCCCCCTACTCCTACGCTGTCGTTTCGAGAATCCATTTTCTCCTCTCCCCACATCGATCTTGTTAAAACCCCATTGTATCCCCCATAACTGTAAACGCCAGAGCTTTGTCTACGCTCCATTTTCCTCCATCTCTCTCTCTCCAAGTTTTGCTCTCACGTCGTTGCCAATGGCGAACTCCGCTGATTCTCCCCTCAAATCCGATGCTCTTTTGGAGCAGATGAAGCAGTATCTCACCACCGATGCTGGAAAAGAGATCCTCAAGAAAGTCGGCCATGTTTATCAGATCAATATTTCTCCCAAGAAAATTGGAACTGATGAGGTGGTTTATACCATTGATCTCAAGAAAGGGGAAGTTACCAAAGGTCCATATGAAGGAGGAAAGCCAGACGCTACCTTATCCTTCAAGGACGAAGATTTCGTTAAAATTGCTTTGGGGAAGCTGAATCCTCAGATTGCTTTCTTGAGGGGTGCTCTGAAAATCAAGGGCAGCATCGCCGCGGCACAGAAATTCACTCCCGACATCTTCCCCAAGCCTGCTAAGTTATGA | 2091 | 44.19 | MGEIFVSVLVFFLTLLWYISLKRNKKEAIKNGTKLPPGSLGWPYIGETLQLYSQDPESFFATKQKRYGEIFKTHILGCPCVMLASPEAARFVLMTQAHLFKPTYPKSKELLIGPSALFFHQGDYHCRLRKLVQNSLSLDAIRTLVPDIDSATASALDSWASSVLISTFHEMKKISFEVGILTIFGHLEAAYKEELKNNYSILDAGYNSFPTNIPGTPYKKALSARKRLSKILGDIIHERREKRLGEKDLLGSLLNSIDDEGEVKISDAQIADNIIGVLFAAQDTTASVMTWIVKYLHDQPKLLQSVKEEQEEIKKLNCENNQGLNWVQTRNMPMSYKVVLESLRMASIISFTFREAVADVEYKGYLIPKGWKVMPLFRNIHHSPEYFPDPHNFDPSRFEVARKPNTFMPFGSGVHACPGNELAKLEMLIMIHHLVTKFSWQVGIGWYAKQGSTQSISRSLARPSSQILEDRPLENCTREYEPALSGPICHQFKAQSKPKPMPKPNHFLVLPNLPLPLLLRCRFENPFSPLPTSILLKPHCIPHNCKRQSFVYAPFSSISLSPSFALTSLPMANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKGEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIFPKPAKL | 696 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30246997 | 30253701 | - | CaPI482276_05g021880.1 | Cam05g2188 | 127592 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g2188 | 696 | Gene3D | Cytochrome P450 | 24 | 453 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | FunFam | Abscisic acid 8 | 25 | 452 | - | - | |
| Cam05g2188 | 696 | Pfam | SCP-2 sterol transfer family | 591 | 686 | IPR003033 | - | |
| Cam05g2188 | 696 | PRINTS | P450 superfamily signature | 408 | 417 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | P450 superfamily signature | 280 | 297 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | P450 superfamily signature | 337 | 348 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | P450 superfamily signature | 417 | 428 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | Gene3D | - | 574 | 695 | IPR036527 | - | |
| Cam05g2188 | 696 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 410 | 419 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cam05g2188 | 696 | PRINTS | E-class P450 group I signature | 407 | 417 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | E-class P450 group I signature | 289 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | E-class P450 group I signature | 269 | 286 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | E-class P450 group I signature | 336 | 354 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | E-class P450 group I signature | 417 | 440 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PRINTS | E-class P450 group I signature | 376 | 400 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | Pfam | Cytochrome P450 | 36 | 442 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | PANTHER | CYTOCHROME P450 26 | 34 | 442 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Cam05g2188 | 696 | FunFam | Non-specific lipid-transfer protein-like 1 | 574 | 690 | - | - | |
| Cam05g2188 | 696 | CDD | CYP90-like | 64 | 442 | - | - | |
| Cam05g2188 | 696 | SUPERFAMILY | Cytochrome P450 | 33 | 445 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cam05g2188 | 696 | SUPERFAMILY | SCP-like | 578 | 693 | IPR036527 | - | |
| Cam05g2188 | 696 | Coils | Coil | 299 | 319 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam02g0628 | Cam-Chr2:7212391 | Cam05g2188 | Cam-Chr5:30246997 | 3.10E-173 | dispersed | |
| Cam05g2188 | Cam-Chr5:30246997 | Cam07g1445 | Cam-Chr7:29038067 | 1.20E-149 | dispersed | |
| Cam05g2188 | Cam-Chr5:30246997 | Cam08g2068 | Cam-Chr8:26206237 | 1.30E-172 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g2188 | K09843 | - | csv:101213916 | 812.757 |