Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2201 ATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGACTCTTCCTCATCGCCTCCCTTATTCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTAGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA 675 46.52 MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPPLFINNPPYNNFPQSTVSFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30350332 30351006 - CaPI482276_05g022010.1 Cam05g2201 127605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2201 224 FunFam BHLH transcription factor 134 197 - -
Cam05g2201 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983(InterPro)
Cam05g2201 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 190 IPR036638 GO:0046983(InterPro)
Cam05g2201 224 CDD bHLH_AtIND_like 132 188 - -
Cam05g2201 224 MobiDBLite consensus disorder prediction 32 53 - -
Cam05g2201 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 201 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2201 224 SMART finulus 137 186 IPR011598 GO:0046983(InterPro)
Cam05g2201 224 Gene3D - 134 196 IPR036638 GO:0046983(InterPro)
Cam05g2201 224 MobiDBLite consensus disorder prediction 28 53 - -
Cam05g2201 224 Pfam Helix-loop-helix DNA-binding domain 140 181 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2201 Cam-Chr5:30350332 Cam09g0035 Cam-Chr9:1317160 2.30E-30 dispersed
Cam02g1322 Cam-Chr2:25777739 Cam05g2201 Cam-Chr5:30350332 1.00E-40 transposed
Cam04g0695 Cam-Chr4:21264605 Cam05g2201 Cam-Chr5:30350332 1.70E-21 transposed
Cam01g1737 Cam-Chr1:30953686 Cam05g2201 Cam-Chr5:30350332 3.30E-06 wgd
Cam05g2201 Cam-Chr5:30350332 Cam08g2075 Cam-Chr8:26298396 2.00E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51989 PF00010 HLH 1.40E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2201 - - - 0.0