Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2203 ATGGCTCTAATGCTTGATAATTGCGAAGGCGTTTTGCTTTCCTTAGACTCTCACAAAGCAATCCCAGCTCCGTTTCTCACTAAAACCTACCAACTGGTTGATGATCCTTCCACTGACCATATTGTCTCATGGGGTGAAGATGACACTACCTTCGTCGTTTGGCGTCCTCCTGAATTCGCTAGAGATCTCCTTCCTAACTATTTCAAACACAACAATTTCTCTAGCTTCGTCCGTCAGCTCAACACTTATCAAGGATTATTTGCCTTTTCGGTAAGATTCGGCTTTCTAAAGGTTGATGTTGGTTCAAGGAAGTGGATTTCCGGATTGAGAATTATAGGATTGTCGATTGAGCACTCGCCATAA 363 42.98 MALMLDNCEGVLLSLDSHKAIPAPFLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYQGLFAFSVRFGFLKVDVGSRKWISGLRIIGLSIEHSP 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30357920 30364202 - CaPI482276_05g022030.1 Cam05g2203 127607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2203 120 Gene3D - 17 110 IPR036388 -
Cam05g2203 120 FunFam Heat stress transcription factor B-4 17 106 - -
Cam05g2203 120 SUPERFAMILY Winged helix DNA-binding domain 22 100 IPR036390 -
Cam05g2203 120 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2203 120 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2203 120 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2203 120 SMART hsfneu3 21 115 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2203 120 Pfam HSF-type DNA-binding 25 84 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2203 120 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 99 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2203 K09419 - - vvi:100259171 175.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2203 Cam-Chr5:30357920 Cam10g0138 Cam-Chr10:2998688 1.00E-24 dispersed
Cam05g2203 Cam-Chr5:30357920 Cam08g2076 Cam-Chr8:26311951 6.40E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g752 Blo01g01525 . Bda01g00571 Bda03g00208 Bpe02g00432 Bpe04g00177 . Bma01g02269 Cmo05g00175 . Cma01g01832 Cma09g00239 Car01g01429 . Sed10g1244 Cpe06g00166 . Bhi04g00361 Tan02g1805 Cmetu03g2201 . Hepe08g1292 . Lcy13g2088 Cla08g01578 Cam08g2076 Cec08g1659 Cco08g1787 Clacu08g1762 . Cre08g1547 Cone4ag1583 Cone7ag1367 Cone17ag0846 Cone20ag0194 Lsi04g01548 Csa04g02421 . Cme03g02056 . . . . . Bpe05g00026 . . Sed01g2675 Cmo01g01891 Cmo09g00233 . Cma05g00178 Car05g00150 . Cpe11g00146 Cpe02g00187 Bhi09g03307 Tan01g4763 Cmetu07g0842 . Hepe01g1775 Mch11g0300 . Cla05g02052 Cam05g2203 Cec05g2220 Cco05g2263 Clacu05g2195 Cmu05g2061 Cre05g2189 Lsi08g01481 Csa02g01940 Chy07g00142 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002351 3 2 1 1 3 2 2 1 2 2 2 2 3 2 2 3 2 2 3 1 2 2 2 2 2 2 2 3 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51990 PF00447 HSF_DNA-bind 6.30E-23 CL0123 Cam TF