Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2214 ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGGGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGCTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTATGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCACGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA 456 52.85 MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSNSATQISDKPDLNEYPNPETSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30439100 30439555 - CaPI482276_05g022140.1 Cam05g2214 127618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2214 151 Pfam AP2 domain 29 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2214 151 CDD AP2 29 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2214 151 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2214 151 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2214 151 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2214 151 MobiDBLite consensus disorder prediction 118 138 - -
Cam05g2214 151 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Cam05g2214 151 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2214 151 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2214 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 150 - -
Cam05g2214 151 MobiDBLite consensus disorder prediction 118 151 - -
Cam05g2214 151 MobiDBLite consensus disorder prediction 1 28 - -
Cam05g2214 151 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1276 Cam-Chr2:25023077 Cam05g2214 Cam-Chr5:30439100 3.80E-40 dispersed
Cam05g2214 Cam-Chr5:30439100 Cam08g0099 Cam-Chr8:1844850 1.10E-20 dispersed
Cam01g1740 Cam-Chr1:31011813 Cam05g2214 Cam-Chr5:30439100 1.60E-39 wgd
Cam05g2214 Cam-Chr5:30439100 Cam08g2085 Cam-Chr8:26393710 2.30E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51992 PF00847 AP2 2.20E-11 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2214 K09286 - csv:101219005 268.855