Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2221 ATGCTCCTTCTTAACAATAACATGGCTGTGGAGCTCATGGTGGGTTTTGGGGATGCTACTACTCCTACTAATTTCACGCCCAAGATGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTACGTTTGATGTCCCATACTCCTAATCACCAACACTCCCAAGACGATTCTTCTGCTTCCACTACTCCTAATGCTATCGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAATAAATTCAAGAAGGTCATTTCTTTGCTCGACCGAAACAGAACCGGCCACGCACGTTTCAGAAGGGCTCCGGTTCTTACTACTACACCGCCCCCTCCTCCTCCGCCCAAGGTCAAGCCGCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCAGTCCCTCAGATTCAAGTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCCCCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACTCCCATCAGCCTTCACATCCACCCAATACCTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCACCCCCGATTTCCGCTGCAAATTCGTATATTTCATCATTAACCGGAGACACCGAAAGCTTACAGCCATCTCTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCTCTTTCATCTTCTTCGCTAAAGAGAAAATGCAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCGTCTTCCGGCCGGTGTCACTGTTCCAAAAAGAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCCGCCGTTAGCTCAAAACTTGCCGATATCCCACCAGACGATTACTCCTGGAGAAAGTACGGGCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTCGAATCATCATAA 1164 48.71 MLLLNNNMAVELMVGFGDATTPTNFTPKMEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNHQHSQDDSSASTTPNAIAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVLTTTPPPPPPPKVKPQHQDPSSSSPISVPQIQVKKQESVSAFKVYCPTPSPVVRLPPLPHNNSHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30489146 30490754 - CaPI482276_05g022210.1 Cam05g2221 127625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2221 387 ProSiteProfiles WRKY domain profile. 309 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2221 387 Pfam Plant zinc cluster domain 267 312 IPR018872 -
Cam05g2221 387 MobiDBLite consensus disorder prediction 107 146 - -
Cam05g2221 387 SUPERFAMILY WRKY DNA-binding domain 312 373 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2221 387 FunFam WRKY transcription factor 65 298 375 - -
Cam05g2221 387 Gene3D WRKY domain 299 375 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2221 387 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 35 376 IPR044810 GO:0003700(InterPro)
Cam05g2221 387 SMART WRKY_cls 314 374 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2221 387 Pfam WRKY DNA -binding domain 316 372 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2221 387 MobiDBLite consensus disorder prediction 115 130 - -
Cam05g2221 387 MobiDBLite consensus disorder prediction 131 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0826 Cam-Chr2:10556202 Cam05g2221 Cam-Chr5:30489146 6.20E-68 dispersed
Cam05g2221 Cam-Chr5:30489146 Cam09g0739 Cam-Chr9:7474378 1.50E-48 dispersed
Cam05g2845 Cam-Chr5:35518474 Cam05g2221 Cam-Chr5:30489146 1.60E-59 transposed
Cam06g1521 Cam-Chr6:26703692 Cam05g2221 Cam-Chr5:30489146 3.40E-55 transposed
Cam01g1744 Cam-Chr1:31053682 Cam05g2221 Cam-Chr5:30489146 7.80E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51994 PF03106 WRKY 4.00E-25 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2221 - - - 0.0