Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2222 ATGGGGACCTACCCATCATCCCCGATCATGCCTCTCCTCTTCTTCCTCTTCCTCTTCATAGCTTTATCAACTGCGTCGCCTTCTTCCATCATCCCCCAGAGGACAGACGAGGAGGTCATGGCGCTCTACGACCAGTGGCGTGCCAAGCATGGGAAGCTGAACAACCTCTTGGGAGCAAAGCCCGACGATCGATTCCACATCTTCAAGGACAATCTCAAGTACATCGATGAAATCAACGCCCAAAATTTGCCCTACCGATTGGGTTTGAACGTCTTCGCAGATCTGACGAACGAGGAGTACCGATCTAGGTACTTGGGAGGCAAATTCGCCTCCGGTTCAAGGAGAAACAGGACGAGCAACCGCTATCAACCTCGCCTTGGAGATGAAGTCCCCGACTCTATCGATTGGAGGGAGAAAGGAGCCGTCGTTCCCATTAAAGACCAGGGAAGTTGTGGGAGTTGCTGGGCGTTCTCAACTATAGCTGCCGTGGAAGGCATAAACCAGATTGTTACGGGCGACTTGATAGCATTATCTGAACAGGAGCTGGTGGATTGTGACACTTCTTATAACGAAGGTTGCAATGGTGGCTTAATGGACTATGCCTTCGAGTTCATCATCAACAATGGAGGCATTGACACTGAAGAAGATTATCCTTACAACGGATTTGATAGCTCCTGTATCCAATATAAGAAAAATGCTAGGGTCGTCTCAATTGATGGTTATGAAGACGTCCCTATAAACAATGAGAAAGCACTGCAAAAAGCAGCAGCTAAACAGGTTGTGGCTGTTGCCATTGAAGGAGGCGGTAGAAGTTTCCAGCTATATCAATCGGGTATATTCACTGGAAAGTGTGGCACAGATTTGGACCATGGTGTTAATGTGGTTGGATATGGGTCTGAAGGGGGCGTTGATTACTGGATTGTGAGAAACTCATGGGGTGCGAGCTGGGGTGAAAGTGGCTACGTCAGGATGCAACGTAATATCGCTTCCCCAAATGGTCTTTGTGGGATTGCAATGGAGCCTTCCTACCCAATTAAAAACGGACCGAACCCACCAAATCCAGGCCCCACTCCTCCAAGTCCGGTGAAACCCCCATCTGTATGCGATGAATATTACACCTGTCCCGCCGCTGAAACATGCTGCTGTATCTTCGAGTACTCAAACTTGTGCCTTGAATGGGGATGCTGCCCACTTGAAAGCGCCACCTGTTGTGATGACCATTACAGCTGCTGCCCCCATGACTATCCCATCTGTAACGTCCGTGCTGGAACCTGCTTGAAGGGTAAGAATGATGTTTTCGGAGTGAAGGCGATGAGGCGCACTGCAGCTGCAGCCAGACCATCGTGGGCTCATGGAGGTGTTACTGTTGGAAAGAGCAGTGCTTAA 1386 49.57 MGTYPSSPIMPLLFFLFLFIALSTASPSSIIPQRTDEEVMALYDQWRAKHGKLNNLLGAKPDDRFHIFKDNLKYIDEINAQNLPYRLGLNVFADLTNEEYRSRYLGGKFASGSRRNRTSNRYQPRLGDEVPDSIDWREKGAVVPIKDQGSCGSCWAFSTIAAVEGINQIVTGDLIALSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDTEEDYPYNGFDSSCIQYKKNARVVSIDGYEDVPINNEKALQKAAAKQVVAVAIEGGGRSFQLYQSGIFTGKCGTDLDHGVNVVGYGSEGGVDYWIVRNSWGASWGESGYVRMQRNIASPNGLCGIAMEPSYPIKNGPNPPNPGPTPPSPVKPPSVCDEYYTCPAAETCCCIFEYSNLCLEWGCCPLESATCCDDHYSCCPHDYPICNVRAGTCLKGKNDVFGVKAMRRTAAAARPSWAHGGVTVGKSSA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30505086 30509463 + CaPI482276_05g022220.1 Cam05g2222 127626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2222 461 Gene3D Cysteine proteinases 26 347 - -
Cam05g2222 461 PRINTS Papain cysteine protease (C1) family signature 305 311 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cam05g2222 461 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cam05g2222 461 PRINTS Papain cysteine protease (C1) family signature 290 300 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cam05g2222 461 Pfam Granulin 379 426 IPR000118 -
Cam05g2222 461 CDD Peptidase_C1A 131 344 IPR039417 -
Cam05g2222 461 Gene3D Granulin 367 436 IPR037277 -
Cam05g2222 461 SUPERFAMILY Granulin repeat 365 399 - -
Cam05g2222 461 Pfam Papain family cysteine protease 130 345 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cam05g2222 461 SUPERFAMILY Cysteine proteinases 34 345 IPR038765 -
Cam05g2222 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Cam05g2222 461 Pfam Cathepsin propeptide inhibitor domain (I29) 43 100 IPR013201 -
Cam05g2222 461 SMART GRAN_2 368 425 IPR000118 -
Cam05g2222 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Cam05g2222 461 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 342 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cam05g2222 461 FunFam Cysteine protease 1 365 428 - -
Cam05g2222 461 SMART pept_c1 130 345 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cam05g2222 461 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Cam05g2222 461 FunFam Cysteine protease 1 25 347 - -
Cam05g2222 461 SMART Inhibitor_I29_2 43 100 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2222 K25900 - - csv:101217590 828.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0658 Cam-Chr2:7623423 Cam05g2222 Cam-Chr5:30505086 7.80E-140 dispersed
Cam05g2222 Cam-Chr5:30505086 Cam11g1913 Cam-Chr11:31593504 6.80E-101 dispersed
Cam01g1746 Cam-Chr1:31075913 Cam05g2222 Cam-Chr5:30505086 1.80E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33