Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2226 ATGGCTGCTTCCTTGCTACTCAGGGGGCATCCTCTCCTGCGGTTAGGGCTTAGGCACCGCGGTCTGTGTACTGGGATTGTGCAAGTGACTCGCCGGTCTTGCTGCACTGCGACGGCGGCATCTACTCCACCGGACGGCAACTTAACATCTGCTGAAAATACTACCTCAGTGTTGAGTGCCACTGAGCCACCAAAGTACCAAAGATGGGACGAACCTGATTATCGGAAGTGGAAAGGCCAGGAAGTGGAAATTCTCAGCGACATCGAGCCTGTCATATGCCTCGCTAAAGAGATCCTCCACTCAAATAGGTATGCAGATGGGGAGCGATTGACATCTGAGGATGAGAGAATTGTGGTAGACAGGCTTCTAGCGCATCATCCACATTCTGAAGATAAAATTGGATGTGGACTTGAATCCATTATGGTCGACCGGCACCCCCAATTCCGGCACTCAAGATGCCTCTTTGTTATAAGGACCGATGGTGGATGGATTGACTTCTCGTATCAAAAGTGTCTTCGGGCATATACTTCCTACCATGTGCTAGATCCAGATCTTGCGCATGTTGTAAGGTTCATGATGAACCAACCATTCAAGAGAAGAGAAATAATCAAACCACAGGCGCATGAGTACAGGTTGAAGGGGTTGATGATTGCAGCTGTAATGGCAGGAAGTGTGATGGATCAGAAAGATACATCTCAAAGGTGGGTCCCTGTCACAGTCAAGCTTATTATTGGAAGGGATCAAGTCAAAAGAGTCGAGCGGCCTAATGAATCGCTGTGCTCTTTCAAGGCTTTCATTTGTCAAAACGGTGGTAAAGCAGTGGTTTGGGAGTTTAGTTTATGGACCGGCTTGGCTGTCTATATGGCCCAGGAGGACATTGTACGAGTGTCACGTCACCAGAATTCTTCACTTCTTCTTGATTCTCTCTACTGCTTTGAAGAGGAGCTTGGAGATGGCCATTCCCAACCAAAGGTCGAAGCTTTATCAATCAATGTTAACATCAATTCCCCAAACTCTGTGTTCTTGTCGGACAGAGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAAAAATAAGCTCCACAACATTCTCCCACACAATCCTTCTCTAACTGCAGCTCGCTCCAAGGCGGTTGAATGGATTCTCAAGGTCAATTCCCATTACTCTTTCACTGCCCTCACCGCCGTTTTGGCTGTTGATTATGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTCTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAGACCATTACAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTTTGGACTATATTGTAAGACGCCTCGGTTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAGATGTGAAAGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTTCCATCTGTAATAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCAAGTCGCCGCAAAATACCAGGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAAATGGAGGATTGCTCACGATTCATCTTAGAGGCTTCATCGAGAGGACACAAACACGAGTGGAAGAATAAACAAAGATTTGGTTTAGTCGACATGTCGTGCAGCTCAGATGATGGTAATAGGAATGTGGACATTGTCGTGTCCTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAGCCACCGTAG 1884 45.97 MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAASTPPDGNLTSAENTTSVLSATEPPKYQRWDEPDYRKWKGQEVEILSDIEPVICLAKEILHSNRYADGERLTSEDERIVVDRLLAHHPHSEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYTSYHVLDPDLAHVVRFMMNQPFKRREIIKPQAHEYRLKGLMIAAVMAGSVMDQKDTSQRWVPVTVKLIIGRDQVKRVERPNESLCSFKAFICQNGGKAVVWEFSLWTGLAVYMAQEDIVRVSRHQNSSLLLDSLYCFEEELGDGHSQPKVEALSINVNINSPNSVFLSDRDFLWEDEELVSLFSKENKNKLHNILPHNPSLTAARSKAVEWILKVNSHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCRCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPQVAAKYQDQLLGILQIDKDKMEDCSRFILEASSRGHKHEWKNKQRFGLVDMSCSSDDGNRNVDIVVSSPETATKKRKIDEQPP 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30530614 30539460 + CaPI482276_05g022260.1 Cam05g2226 127630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2226 627 PANTHER PROTEIN EMBRYO DEFECTIVE 514 62 177 IPR044673 GO:0009507(PANTHER)|GO:0009658(PANTHER)|GO:1901259(PANTHER)
Cam05g2226 627 Gene3D - 377 480 - -
Cam05g2226 627 SMART cyclin_7 385 473 IPR013763 -
Cam05g2226 627 SUPERFAMILY Cyclin-like 349 480 IPR036915 -
Cam05g2226 627 CDD CYCLIN_AtCycD-like_rpt2 482 568 - -
Cam05g2226 627 Gene3D - 481 569 - -
Cam05g2226 627 Pfam Cyclin, N-terminal domain 362 480 IPR006671 -
Cam05g2226 627 ProSitePatterns Cyclins signature. 380 411 IPR048258 -
Cam05g2226 627 SMART Cyclin_C_2 482 599 IPR004367 -
Cam05g2226 627 CDD CYCLIN_AtCycD-like_rpt1 379 477 - -
Cam05g2226 627 Pfam Cyclin, C-terminal domain 482 581 IPR004367 -
Cam05g2226 627 FunFam CYCLIN D32 481 570 - -
Cam05g2226 627 MobiDBLite consensus disorder prediction 604 627 - -
Cam05g2226 627 Pfam Protein of unknown function (DUF3223) 96 172 - -
Cam05g2226 627 SUPERFAMILY Cyclin-like 483 578 IPR036915 -
Cam05g2226 627 Gene3D - 87 179 - -
Cam05g2226 627 FunFam D6-type cyclin 363 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0660 Cam-Chr2:7659345 Cam05g2226 Cam-Chr5:30530614 2.00E-58 dispersed
Cam05g2226 Cam-Chr5:30530614 Cam08g1609 Cam-Chr8:22257233 1.30E-33 dispersed
Cam01g1752 Cam-Chr1:31117588 Cam05g2226 Cam-Chr5:30530614 3.90E-61 wgd
Cam05g2226 Cam-Chr5:30530614 Cam08g2089 Cam-Chr8:26428121 6.00E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2226 K14505 - csv:101218302 556.984