Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2238 ATGAGGACGGCATATCTCCCCACTTGGACTTTTGTTGACAGAATCACTTTAATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGCAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTTGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGGCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGACGGAGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGATTTACTTTATTTCGTTTCGTTGTTTTGAAAACCAAAACTGGCGCTTCTCATTTTGCCCAAAATCTATTCCCAATTTCATTGTTAGTACATATTCTACCCGCGCCAACGCCCAAACCTCACTTAACCGAACATTCCCCTTCTCCTTCTCACTTCCCTTTTCAGATCCCAGGTCGCACTGAAACTATGGCGGATAAGGAGAATATATTTCGATTTACTAGGGGTTCTAAGAAGAGGGCCGCCGAAGCCGCTACCCCCGACGACCGCTCTGCTAACAAGAAGAGAGTCGTTCTTGGAGAGCTCCCTATTTTACAGAATGCTACTTCTTCCGTCGATCGTAAGTCCAGGTCTAGAGCCACCAGGCAGAGGCGGAGAGTAAAATCAAGGGATACTGCCGGCACAAGTGCTGCTGCTGCTGCTGCTGCTCCTGAAATCAATACACTTCCGGAAGGCGATGTCAAGTTATCAGATGAGGGCAATTCGGAAGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAATATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAAGGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCTCTAAATGAAATCAGCAGGCAAAAACTTCAGTTGCTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAAGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAATCCCACAATAAAGACGTTTTTAAGGAGATTCACAATGATTGCTCAAGAGACTTATGAGTTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTCATATTTCTAGCACGATTTATGATCCAACCCAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATCAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTATCTGTCCTGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTGTCTACTCGATTGCATTTAAGCTTGCACTTTTCTTTAACCTTCTATACTGA 1911 44.64 MRTAYLPTWTFVDRITLMGSCEAAVVAMSMAKSSESQFPDLRKQLRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNSSATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPTECPLSHQSLENSSIVPDGDNSGPGNRRTLGVAGFTLFRFVVLKTKTGASHFAQNLFPISLLVHILPAPTPKPHLTEHSPSPSHFPFQIPGRTETMADKENIFRFTRGSKKRAAEAATPDDRSANKKRVVLGELPILQNATSSVDRKSRSRATRQRRRVKSRDTAGTSAAAAAAAPEINTLPEGDVKLSDEGNSEDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNEISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADIKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVLPSPPEIPIPYFEDVVYSIAFKLALFFNLLY 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30609286 30617128 - CaPI482276_05g022380.1 Cam05g2238 127642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2238 636 SMART cyclin_7 490 578 IPR013763 -
Cam05g2238 636 SMART cyclin_7 393 477 IPR013763 -
Cam05g2238 636 FunFam Mitotic cyclin 6 371 471 - -
Cam05g2238 636 Gene3D - 355 605 - -
Cam05g2238 636 ProSitePatterns Cyclins signature. 388 419 IPR048258 -
Cam05g2238 636 FunFam Cyclin A1 473 605 - -
Cam05g2238 636 SUPERFAMILY Cyclin-like 344 483 IPR036915 -
Cam05g2238 636 MobiDBLite consensus disorder prediction 255 343 - -
Cam05g2238 636 SUPERFAMILY Cyclin-like 486 611 IPR036915 -
Cam05g2238 636 Pfam Cyclin, N-terminal domain 355 483 IPR006671 -
Cam05g2238 636 CDD CYCLIN_AtCycA-like_rpt2 486 600 - -
Cam05g2238 636 Pfam Cyclin, C-terminal domain 486 608 IPR004367 -
Cam05g2238 636 MobiDBLite consensus disorder prediction 255 277 - -
Cam05g2238 636 Gene3D - 369 484 - -
Cam05g2238 636 PANTHER CYCLINS 339 597 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam05g2238 636 CDD CYCLIN_AtCycA_like_rpt1 345 482 - -
Cam05g2238 636 SMART Cyclin_C_2 486 609 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0694 Cam-Chr2:8189765 Cam05g2238 Cam-Chr5:30609286 1.20E-84 dispersed
Cam05g2238 Cam-Chr5:30609286 Cam08g1030 Cam-Chr8:16541368 8.80E-83 dispersed
Cam02g2334 Cam-Chr2:35930908 Cam05g2238 Cam-Chr5:30609286 1.20E-45 transposed
Cam09g2316 Cam-Chr9:37584174 Cam05g2238 Cam-Chr5:30609286 8.90E-43 transposed
Cam05g2238 Cam-Chr5:30609286 Cam08g2100 Cam-Chr8:26488282 3.90E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2238 K06627 - csv:101207493 659.833