Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2252 ATGAGTTGCAACGGTTGCCGAGTGCTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTCCAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCGGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACCGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA 612 51.63 MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQPKETKLLNLFV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30691803 30692520 - CaPI482276_05g022520.1 Cam05g2252 127656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2252 203 MobiDBLite consensus disorder prediction 166 191 - -
Cam05g2252 203 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cam05g2252 203 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cam05g2252 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 121 - GO:0010468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2252 Cam-Chr5:30691803 Cam06g1623 Cam-Chr6:27689349 3.10E-37 dispersed
Cam01g1790 Cam-Chr1:31473310 Cam05g2252 Cam-Chr5:30691803 1.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51996 PF03195 LOB 9.40E-24 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2252 - - - 0.0