Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2254 ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTATGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCAATTAATCTCCCTCAACCCACTTCAGGCTTCATGGCTGATGCTTGGTTTTGTTCTTTGGATTCCATCACTGCTAATTTGCCTTCTTGTCATGTTGGTAATGCTATTGATCAATTTCCTTTTATTGCTGCTGCTTCTGATCAACATCATCATCATCACGTGTCCATGTCCATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTACTACTGACATCTTGCTCCAAGAAATCACTGGCTTTTCGAGTGAAGATAAATTTCTCGACATGGATGCTCAAACCCACCTAGGGGATGATGATCATAATAATGCTACCAATTCTGCAAATGCATTATTCCACCACAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTACTCCAAACAATGTGCAGAAAAGTAGGAAAGGCAGAGAGTCAAGTGGTAAAAGTAATAGCTCTAGCAAAGAGAAAGTGATGAGCAGTACTCGGCGGCGCAAATGTGAAGAAGAAGAACAGGAAAATGGAGGGTCGTGCGATATGAACAGTTGCACCAGCGATAACTCATCAGAAGATGACAATGCTTCACAAGATACCAATGGCGGTGGCTCTGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATTAATGAACGGCTTAGAATTCTGCAGAAGCTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGCTGTGGATGTATGCCCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA 1008 41.57 MDSFGGFNGEGEWDLCSSILSLEDLDFTPINLPQPTSGFMADAWFCSLDSITANLPSCHVGNAIDQFPFIAAASDQHHHHHVSMSIEENKMESIFSASTTDILLQEITGFSSEDKFLDMDAQTHLGDDDHNNATNSANALFHHKRKSIVVDDDHNKLINPNKKIRTPNNVQKSRKGRESSGKSNSSSKEKVMSSTRRRKCEEEEQENGGSCDMNSCTSDNSSEDDNASQDTNGGGSVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30716309 30718150 + CaPI482276_05g022540.1 Cam05g2254 127658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2254 335 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 84 311 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2254 335 CDD bHLH_AtIND_like 252 314 - -
Cam05g2254 335 SMART finulus 257 306 IPR011598 GO:0046983(InterPro)
Cam05g2254 335 FunFam Basic helix-loop-helix transcription factor 252 309 - -
Cam05g2254 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 300 IPR011598 GO:0046983(InterPro)
Cam05g2254 335 MobiDBLite consensus disorder prediction 209 235 - -
Cam05g2254 335 Pfam Helix-loop-helix DNA-binding domain 261 301 IPR011598 GO:0046983(InterPro)
Cam05g2254 335 MobiDBLite consensus disorder prediction 151 263 - -
Cam05g2254 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 317 IPR036638 GO:0046983(InterPro)
Cam05g2254 335 Gene3D - 253 309 IPR036638 GO:0046983(InterPro)
Cam05g2254 335 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0712 Cam-Chr2:8469170 Cam05g2254 Cam-Chr5:30716309 8.20E-37 dispersed
Cam05g2254 Cam-Chr5:30716309 Cam10g1021 Cam-Chr10:22591753 1.60E-38 dispersed
Cam03g0879 Cam-Chr3:10942864 Cam05g2254 Cam-Chr5:30716309 1.60E-18 transposed
Cam05g2254 Cam-Chr5:30716309 Cam08g2119 Cam-Chr8:26599842 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51998 PF00010 HLH 1.00E-08 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2254 - - - 0.0