Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2268 ATGCCTCCTGTTGCCTTCCATTCCAATTTACAATTCCCCTTCCACATATCCTCCGCCGTGGGCGCCGGCACAAGGTCTTACTGGACGGTGAAGTCCTTGCCGGGATTGTCGGGGCCTCTGCCTTTCGAGCTGGAAACAGGATACGTAGGAGTGGGAAATTCGGAGGAATTTCAGCTGTTTTATTATTTTATCAAATCTTATGGAAATCCCAAAACGGATCCTCTGATTTTGTGGCTCACTGGAGGCCCCCGTTGCTCTACTCTCTCTGGAATTGCCTTTGAAAGTGGTCCAATAAATTTTGAGGGAGAACCTAAAAATGGGAGCATTCCTCAAGTAATCTTGAACCCTTACTCATGGACCAAGAAATCCAGTATAATATATATAGACTTGCCGGTTGGCACGGGTTTTTCATATGCTAAAACTTCAAAAGATCATAAATCAGGAGATTATGAACAAGTTCGCCATTCCCTTCAATTTTTTAGAAAGTGGTTGGTCAATCATCCAGAATTTATATCAAATCCATTCTATGTTGCTGGAGATTCTTACGCTGGTATGATTGTTCCAGTTGTTGTTAAAGAAATTTTAGAAGAAAATGATAAACATATTTTTCCATTCATAAATTTTCAGGGATACATATTGGGAAATCCTATCACTACCCCTCATTCAAATAAAAATTTTGAAATCCCATTTGCTCATAACATGGCCCTCATCTCGGATGAATTGTTTGAGTCGTTGAAAACTAGTTGCCAAGGAGAATACGTGAACATCGATCCAAATAATGTGGAGTGCTTAAGACATCATGATATGTTTAAAAAGTGTACTTCTATCGTTCTAGATGGATGTATTTTATGGCCCAAGTGTTCATCTTTGAAAGAACCAGGTGTGTCTGAACCAAATATGCCTGGTACTCATAGATCTCTCTACAACGTTCCTGTTGATCGTAGATGTCGTGTGTATGACTACCTTCTTGCTTATTATTGGGCTAACAATGACCAAGTTCGAAAAGCACTTCATATACGTGAGGGAAGCATTGGAGAATGGATTAGATGTCGTGATAGAGATCATTACAATGTTGAGTTTGATAGTGTTTTTCCTTATCACGTGAACCTTAGTTCTAAAGGTTATCGATCACTAGTCTATAGCGGAGACCATGATATGATAGTATCGCATATGGACACTCAAGCATGGATCAAATCTCTAAATTATTCTATAGTAGATGATTGGAGGCCATGGTACATCGAGGATGAAGTTGCCGGATACACGAGAAGTTTTGCAAATAAGATGACATTTGCAACTATAAAAGGTGGAGGACATACAGCAGAATATAAGCGTAAAGAATGCAGCATATTATTTAATAGATGGATAGTGGGAGAATCCTTATAA 1383 39.12 MPPVAFHSNLQFPFHISSAVGAGTRSYWTVKSLPGLSGPLPFELETGYVGVGNSEEFQLFYYFIKSYGNPKTDPLILWLTGGPRCSTLSGIAFESGPINFEGEPKNGSIPQVILNPYSWTKKSSIIYIDLPVGTGFSYAKTSKDHKSGDYEQVRHSLQFFRKWLVNHPEFISNPFYVAGDSYAGMIVPVVVKEILEENDKHIFPFINFQGYILGNPITTPHSNKNFEIPFAHNMALISDELFESLKTSCQGEYVNIDPNNVECLRHHDMFKKCTSIVLDGCILWPKCSSLKEPGVSEPNMPGTHRSLYNVPVDRRCRVYDYLLAYYWANNDQVRKALHIREGSIGEWIRCRDRDHYNVEFDSVFPYHVNLSSKGYRSLVYSGDHDMIVSHMDTQAWIKSLNYSIVDDWRPWYIEDEVAGYTRSFANKMTFATIKGGGHTAEYKRKECSILFNRWIVGESL 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30820475 30826188 - CaPI482276_05g022680.1 Cam05g2268 127672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2268 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2268 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2268 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2268 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2268 460 Gene3D alpha/beta hydrolase 33 460 IPR029058 -
Cam05g2268 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 454 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cam05g2268 460 SUPERFAMILY alpha/beta-Hydrolases 29 457 IPR029058 -
Cam05g2268 460 Pfam Serine carboxypeptidase 34 456 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2268 460 FunFam Serine carboxypeptidase-like 11 24 460 - -
Cam05g2268 460 FunFam Carboxypeptidase 315 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2268 Cam-Chr5:30820475 Cam05g2863 Cam-Chr5:35640034 2.80E-179 dispersed
Cam05g2268 Cam-Chr5:30820475 Cam05g2270 Cam-Chr5:30835146 6.70E-173 proximal
Cam05g2267 Cam-Chr5:30811904 Cam05g2268 Cam-Chr5:30820475 3.60E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2268 K16296 - csv:101207623 719.539