Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2270 ATGCCCACCGCCGTCTTCCGCGTCTCTGTTCTGTTCGTCTCTGTTTTTCAAATCATCTCCGCCGCAGGGTCGTCGCGCTGGACGGTGGAGTATCTGCCGGGATTTGCAGGCCGTCTCCCATTCGAACTGGAAACAGGATATGTGGGTGTTGGGGATTTGGAGGAAGTGCAATTGTTTTATTATTTTGTGAAATCGGAAGGAAATCCAAAGACGGATCCTCTGCTTTTTTGGCTCACCGGAGGCCCCGGTTGCTCTGCTTTAACTGCACTTGCCTTTGAAGTTGGTCCCATAAATTTTAAGATTGAGCGATACAATGGGAGCTTACCTAAAATAATCTTGAACCCTTATTCGTGGACGAAGAAATCCAGTATAATAATGGTAGATTTGCCAGTGGGAACAGGGTTTTCATATGGTAAAACTCCACAATCTCTTAAGACTGGAGATTTTAATCAAGTTCATCATTCTATTCAATTTTTTAAAAAGTGGTTAACTCATCATCCCGAATTTATATCTAATCCATTTTACGTGGGTGGAGATTCATACTCGGGTATTATCATTCCGGTTATTGCTCAAGAAATTTTGGAAGAAAATAAGTATGCTCCCTATGTAAATCTTCAGGGATACATATTGGGAAACCCAGTCACCATTCGTGACACGTATCAAAATTTTGCAATTCCTTTTGCTCATAGAATGACTCTTATCTCTGATGAGTTATTTGAGTCATTGACCTCTAGTTGCAAGGGAGAATATATAAATATTGATCCGAGCAATGTGGATTGTTTAAGACATTATAATACGTACCAAAAGTGTGTTTCAAAGATAGAAAAGTCAAGTATTTTGTTGCCAAAATGTTCGTTTCATTCTCCAAAGAAACAAAAAGATGCATTTGATCGAAGATCTCTTTACAATACCCCCAAAGTGCTTCTTGATCCCGAGCCAGCACTTCCTTCTCTTGATTGTCCTGGAAGCATTGGAGAATGGACAAGATGTAGGGATCGGCAAAATTACAACTTTGATGTTGAGAGTGCTTTTCCTTATCATGTCAACCTTAGTTCGAAAGGTTACAAGTCTTTGATTTATAGTGGGGATCATGATATGATTGTATCGCATTTGGACACTCAAGCATGGATTAAATCTTTAAATTATTCCATTGTTGAGGATTGGAGACCTTGGTTTATTGCAGATCAAGTAGCTGGATATACAAGAAGCTATGCAAATAAGATGACATTTGCCACTATAAAAGGTGGAGGGCACACAGCAGAATATACACAAAAAGAATGCAGTGTAGTATTTAGTAGATGGATAACTGGAGAACCCTTATAA 1323 39.3 MPTAVFRVSVLFVSVFQIISAAGSSRWTVEYLPGFAGRLPFELETGYVGVGDLEEVQLFYYFVKSEGNPKTDPLLFWLTGGPGCSALTALAFEVGPINFKIERYNGSLPKIILNPYSWTKKSSIIMVDLPVGTGFSYGKTPQSLKTGDFNQVHHSIQFFKKWLTHHPEFISNPFYVGGDSYSGIIIPVIAQEILEENKYAPYVNLQGYILGNPVTIRDTYQNFAIPFAHRMTLISDELFESLTSSCKGEYINIDPSNVDCLRHYNTYQKCVSKIEKSSILLPKCSFHSPKKQKDAFDRRSLYNTPKVLLDPEPALPSLDCPGSIGEWTRCRDRQNYNFDVESAFPYHVNLSSKGYKSLIYSGDHDMIVSHLDTQAWIKSLNYSIVEDWRPWFIADQVAGYTRSYANKMTFATIKGGGHTAEYTQKECSVVFSRWITGEPL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30835146 30838735 - CaPI482276_05g022700.1 Cam05g2270 127674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2270 440 Gene3D - 314 440 - -
Cam05g2270 440 PRINTS Carboxypeptidase C serine protease (S10) family signature 408 421 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2270 440 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2270 440 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2270 440 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2270 440 FunFam Serine carboxypeptidase-like 19 22 290 - -
Cam05g2270 440 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 434 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Cam05g2270 440 SUPERFAMILY alpha/beta-Hydrolases 29 438 IPR029058 -
Cam05g2270 440 Pfam Serine carboxypeptidase 33 436 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cam05g2270 440 Gene3D alpha/beta hydrolase 24 295 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2267 Cam-Chr5:30811904 Cam05g2270 Cam-Chr5:30835146 4.00E-167 dispersed
Cam05g2270 Cam-Chr5:30835146 Cam05g2863 Cam-Chr5:35640034 7.50E-182 dispersed
Cam05g2268 Cam-Chr5:30820475 Cam05g2270 Cam-Chr5:30835146 6.70E-173 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2270 K16296 - csv:101210918 553.132