Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2278 ATGGGCGTTGTTTGTTGGCTTCTGGGGGAAGTGGTTTGGAACTTTGGATGGATTGAAGTGAAGGATTTATGTTGCTTTTCTGCTACTTTCTGCTGGTTTCTTCTCTTAATCTGTGATGTCTTTTGCTGGATGACGAGTACTCTAATGGCAGGAATGTTTAATGGGGAGGGATCGTCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCATGGTCGTTATCGCCCGGTATAGGGTCACCATACCCTTTTCTAAGGGAGCTCAAATCTGAAGAGAGGGGGTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCCAATCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTGGAGCAAATTTCCCACCTTGCTTCACCCGACGGGGACACAATGCAGCGGATTGCTGCTTACTTCACCGAGGCACTCGCTGACCGGATACTCAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATATTGTCAGTCCCTGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTATGTCCTTTCTTGAAGCTTGCTTATGTGATAACTAATCAGGCTATTATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACTTGAGAATAACTGGAATTCATGAACAAAAAGAGGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTTAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAAGGTCAAGACAGGTGAAGCACTTGCAGTTAGCTCCGTACTTGAACTTCACTCGGTTTTGGCTACAGACGACGATAAGAAAACGTCACCATCTGCATCGAAGAACTTGCAAAAACTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTCGAGACAGATTCGTTGCAAGTTTTTGGTAGTCCTGATTCGGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAACAGTTTTTTGACTGCGCTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAACAAGAATCAAACCTGAATGGATCTGCTTTCATGGAGAGAGTACTAGAAGCATTAAACTTCTATGCCGCATTGTTTGATTGCTTAGAGTCAACCGTGTCGAGATCATCGCTCGAGCGACAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGTGGAGAGGACAGAGAGGCACGAAAAGCTCGAGAGATGGATACTGAGGCTCGAATCCGTGGGGTTTGGAAAGGTTCCATTGAGTTATCATAGTATGTTACTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGCAGTAATAGTCCTGAGGTTCAGCCGCACCGATCACATCTCTTATTTTTCCCCTCTGCCGTTGCCGACGCCGATCGCCGCCACGCCTCCACCGCCATTTTTCTTTCTCACTGTCTGCTGCAGGCTCACGCCGCCACCACTCCAACCCCGTTTTCCCTCTCTCCTGAGGTGCCCCGTTTCTACACCAGTCTCAATCTAACCTACTCGCCGTCCGCCCCATCTCTCAGTGATCAGTATCTGCACGCACGGCCTGCGTTTCTTCCAACACATTCATCTCCTTCTCTCTCGATGGAGGGTTCCATTGCTGAAGAACTTTATTCCGAGAGTTTACAGTCAACAAAATCAAAATTGGGTGATTTGTCATTATCTGATTACAGACAAAATCGGCCGTCAGGTTCTGGTGTGGATGACTCGTGCGAAGATGACGGATCTTTATGGGGTGGTTCTGATGAAGGCTTGGAGGAAACAACTGATTTGGACAGAGAGTGGCAGAGAAGACATGACCAATTTCATACGATTGGATACCGCGATGGTTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCGCTGTCGGATATAAGTTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCCTTCCTGATGACTTGAAAGAGAAGCTAGCAGGAACTGAAGAGAACCGAAGAAAATTTCAAAGCTTGTATGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGATGATATTACGGCACAGCGCACAAAAGAAGAGCGTGTAAATGAAAATACAAATTCCCAAACAAAGGATTTGTCGAAGCAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTCTACCCAAATCACCTGCTCTGAATCTTCATTTACATGAAGAACAGTAG 2400 45.08 MGVVCWLLGEVVWNFGWIEVKDLCCFSATFCWFLLLICDVFCWMTSTLMAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLKVKTGEALAVSSVLELHSVLATDDDKKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFGSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSLERQRVEKMLLGEEIKNIIACEGVERTERHEKLERWILRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGSNSPEVQPHRSHLLFFPSAVADADRRHASTAIFLSHCLLQAHAATTPTPFSLSPEVPRFYTSLNLTYSPSAPSLSDQYLHARPAFLPTHSSPSLSMEGSIAEELYSESLQSTKSKLGDLSLSDYRQNRPSGSGVDDSCEDDGSLWGGSDEGLEETTDLDREWQRRHDQFHTIGYRDGLIAGKEAAAQEGFNVGFKQSVAVGYKLGLVRGVSSVLASLPDDLKEKLAGTEENRRKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNENTNSQTKDLSKQNSDYGRLRKFYGELEALLPKSPALNLHLHEEQ 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30894575 30902706 - CaPI482276_05g022780.1 Cam05g2278 127682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2278 799 ProSiteProfiles GRAS family profile. 87 512 IPR005202 -
Cam05g2278 799 MobiDBLite consensus disorder prediction 606 638 - -
Cam05g2278 799 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 91 484 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam05g2278 799 Pfam GRAS domain family 96 487 IPR005202 -
Cam05g2278 799 Pfam Essential protein Yae1, N terminal 658 695 IPR019191 -
Cam05g2278 799 MobiDBLite consensus disorder prediction 749 768 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1312 Cam-Chr3:26880222 Cam05g2278 Cam-Chr5:30894575 2.50E-151 dispersed
Cam05g2278 Cam-Chr5:30894575 Cam11g0755 Cam-Chr11:9384547 2.60E-55 dispersed
Cam05g2278 Cam-Chr5:30894575 Cam03g0134 Cam-Chr3:2246993 9.80E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52001 PF03514 GRAS 6.60E-121 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2278 - - - 0.0