Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2298 ATGGCCAAAGACGACGCCACCGCCGCGCGACGGTTCTCCGGCAAGGACTACCACGACCCTCCGCCGGCGCCGCTGTTCGACGCGGCGGAGCTCAGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACCATATTGACTGTGATTGGCTACAGCAGCCAGACCGATACCAGTAAGCCCGGCGCCGACGCTTGCGATGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCCGGCATTTCAGGTGGGCACATAAACCCGGCGGTGACGTTCGGGCTATTCTTGGCCCGTAAAGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGAGCCATATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCGTTGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACTGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTATTGGCTCCCCTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATTACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGATAAACCTTGGGATGAACATTGGATATTCTGGGTTGGGCCATTCGTCGGAGCCGCCATCGCAGCCTTCTACCATCAGTTCATTTTGAGGGCCGGCGCCGCCAAGGCTCTCGGCTCTTTCAGGAGCACCCCCTCCGTTTGA 864 57.06 MAKDDATAARRFSGKDYHDPPPAPLFDAAELSKWSFYRALIAEFIATLLFLYVTILTVIGYSSQTDTSKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKDKPWDEHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSTPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31095131 31099553 - CaPI482276_05g022980.1 Cam05g2298 127702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2298 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2298 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2298 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2298 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2298 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2298 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2298 287 CDD MIP 38 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2298 287 FunFam Probable aquaporin PIP1-2 23 285 - -
Cam05g2298 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cam05g2298 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Cam05g2298 287 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cam05g2298 287 NCBIfam MIP family channel protein 42 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2298 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cam05g2298 287 Pfam Major intrinsic protein 30 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0429 Cam-Chr2:5011142 Cam05g2298 Cam-Chr5:31095131 9.50E-122 dispersed
Cam04g0825 Cam-Chr4:22513641 Cam05g2298 Cam-Chr5:31095131 4.20E-133 dispersed
Cam04g0826 Cam-Chr4:22529881 Cam05g2298 Cam-Chr5:31095131 3.20E-133 dispersed
Cam04g0828 Cam-Chr4:22541937 Cam05g2298 Cam-Chr5:31095131 6.20E-29 dispersed
Cam04g0967 Cam-Chr4:23710415 Cam05g2298 Cam-Chr5:31095131 2.40E-28 dispersed
Cam05g2298 Cam-Chr5:31095131 Cam07g0405 Cam-Chr7:5396100 2.70E-108 dispersed
Cam10g1998 Cam-Chr10:33871730 Cam05g2298 Cam-Chr5:31095131 9.50E-117 wgd
Cam05g2298 Cam-Chr5:31095131 Cam08g1194 Cam-Chr8:18281454 1.00E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2298 K09872 - csv:101204956 555.444