Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2332 ATGGGCTGCGGCTGCGCCGCCCTTTCCAATTCAGCCGGCGGCTCCGGCATCCACCACTCACGAGCCCCATTTGAAAACAGAGAAAAGATATCACAGAACAAAGCTGTCAGAAACATCCTCGAGTTCCTCATTGTACCTTTGAGGATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTGTTGCTTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCTGTATGGAGAAGACAAATGCTGTCCGTCGAATCAAAGGATCAAACTTTCTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAACCGACAGCGACTGGCCGACTGCGGTATCGGGTTCGGCCGGGATGCCATGGGCGGCAAAGGCGGAAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACTCCGGGGACTCTCCGGCACGCTGTGATCCAATTCGAACCGCTGTGGATCATCTTCTCCGCCGACATGACTATCAAGCTGAAATACGAGCTTATCATTAACAGTTTCAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATTCAATACGTGTCTAATGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCACGTGGGGCATAGAGGGCTATCAGACGGAGATGGGATCTCAATTTTTAGCTCAAGAAAAATATGGATCGATCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGACGCAATAATGGGATCAACAGGAATTACAATATCAAATAGCTACTTCTCGCACCATGATGAAGTGATGTTGTTAGGGCACGACGATCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGCGAGGCATTAGTCCAACGCATGCCCCGTTGTAGACATGGCTACATTCACGTCGTCAACAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGTAGTGCCCAACCCACTATTAACAGCCAAGGCAATCGCTACACCGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGACATTTTGGTGAACGGCGCGTTTTTTGTACCTTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGTGTTTTGGGCGCCCCCAGGTATAATGCTGGTCAAGGAATTGTATATCCGGGATTCAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGTAATGGTAATGATGATTACTACGGCATGATATTTAAAGCTGGTGGTTATAGAGTATTGCCAATATTGCCCTCCATAAACTTATGTACTCAAATTCTATTACTTTTGTACATAGTCACAAATTATAGTGGCCTATTCACATTATAG 1656 49.09 MGCGCAALSNSAGGSGIHHSRAPFENREKISQNKAVRNILEFLIVPLRMFPVLSILLIWMSASIFGVASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSVESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNAGQGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAGGYRVLPILPSINLCTQILLLLYIVTNYSGLFTL 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31373001 31383540 - CaPI482276_05g023320.1 Cam05g2332 127736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2332 551 PANTHER PECTATE LYASE 18-RELATED 65 461 IPR045032 GO:0030570(InterPro)
Cam05g2332 551 PRINTS Pollen allergen Amb family signature 165 190 IPR018082 -
Cam05g2332 551 PRINTS Pollen allergen Amb family signature 438 461 IPR018082 -
Cam05g2332 551 PRINTS Pollen allergen Amb family signature 201 217 IPR018082 -
Cam05g2332 551 PRINTS Pollen allergen Amb family signature 265 286 IPR018082 -
Cam05g2332 551 PRINTS Pollen allergen Amb family signature 367 386 IPR018082 -
Cam05g2332 551 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Cam05g2332 551 PRINTS Pollen allergen Amb family signature 141 158 IPR018082 -
Cam05g2332 551 PRINTS Pollen allergen Amb family signature 409 433 IPR018082 -
Cam05g2332 551 SMART amb_all 193 390 IPR002022 -
Cam05g2332 551 Pfam Pectate lyase 201 382 IPR002022 -
Cam05g2332 551 SUPERFAMILY Pectin lyase-like 109 438 IPR011050 -
Cam05g2332 551 Gene3D - 118 460 IPR012334 -
Cam05g2332 551 FunFam Pectate lyase 118 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0405 Cam-Chr5:3733631 Cam05g2332 Cam-Chr5:31373001 2.60E-153 dispersed
Cam05g2332 Cam-Chr5:31373001 Cam06g0790 Cam-Chr6:10686862 9.80E-155 dispersed
Cam04g0871 Cam-Chr4:22867350 Cam05g2332 Cam-Chr5:31373001 1.20E-42 transposed
Cam04g0961 Cam-Chr4:23668461 Cam05g2332 Cam-Chr5:31373001 3.10E-181 transposed
Cam05g2332 Cam-Chr5:31373001 Cam08g1230 Cam-Chr8:18675532 5.30E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2332 K01728 - csv:101205739 937.176