Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2350 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAAAGCAACGCTTCTAATGGCGGCAATGTTCAGAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGAAAGATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGTGATATCAAGCCTGAAAACTTGCTACTTACTTCTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTTGATAGTCGAATTACCGTTCTCCCGAATGCAGCATCAGATGATAAAGCATGTACATTTGTGGGAACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCGCTCGGGTGCACCTTGTACCAGATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCTGAGCAAGCAAGGGACCTCATCGACCACCTATTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCAGAGGGTTATACTTCTCTCAAGAATCATCCCTTCTTTGAGGGGGTTGATTGGAACAACATAAGAGCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGAGTCATTCGAATGAGAACGATGATGGCTCCGAGTCCTCTTGGAATCCTTCACATGTTGGAGACGGTGCATCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCTGAAGGCTCACATCATATTACTCGACTTGCATCGATTGACTCCTTTGATTCAAAATGGCAACAATTCCTTGAGCCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAGCTAACAAGCAAAAAAGTTCAACTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCAAAGAAGATTGCTTCTTTTGAGGATGCGAAACAGCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGAATGCTTAAAATGGATGAATTTTTGAAGAACCAAATCTTTGCAACTCATGCAGTTGCTGCTACAGGCTCAGTGACACTAAGCACAGTTCTTACTTACCCTCTTGACACTATCAAAACTCTAATCCAGGTTGGTTCTGATCCTTTAGGATCTGGTAAACAGTTGACGATTACTCAGGCTTTACAGAGAATTCGATCTTTCTCAGGAAATTCAGGTTTGTATAGTGGATTTGGATGGTTGGCCTTTGGGAGACTATTTGGGATAGGAGCTCGATTTGGAATATATGAAATTGTGACAGCATTTTATAAAGATGGTCGTGAAGATGATTACGTGCATGTGTCTGAGGCTCTTCTAGCTGGACTTATGGCTGGTGCTGCCGAATCATTGATATGCTCTCCATTTGAGCTTGTTAAACTTCGTGCCCAGGTGACCTCCGCAGTTCGTTTACCAAGCCCAAGTTCTCTCGTCGGACAAGAAAGAGCTCTTGCACCTTCTATGTCAAGATTTCTTCTTCGCTATACACTGGATCAGAAAGCCTTAAACCATTCAGTTGGTCTTTTATCCACCCTAACAACTAAGCACCCAAATATAAAAGGTGCTTTACTAGAGTATCCATGGATGATGACGGGGTCTGGGAGGCCACCTGCAGTCAGCAATGTGCATAGGCCATCAGATATCATTTCACTAGAAGGATGGCAAGCATTTTGGAGAGGTCTACGATCAGGGATTGCGAGGGATTCCATCTTTAGTGGCGTATTTTTCTCAACCTGGCAATTTCTGCACCAGTCTATGCTTATTTGGAAGAGCATCGAGATGGATCCACCACCCAGGTCAAATGATGAAGTAGGCCCACTGTCTCCGTTTTCAGTTAGTCTTGCAGCTGGATTTTCAGGTGCAGTTGCTGCGGCTGCTTCTCATGGTTTTGATACTGCCAAGAGTCGATCACTATGCACCGTGCTACCCAAGTATGTGGTCATGGAGAGAAAGTATCTCAAATGGCGGAGACCGGGTAATAGATTCGAGAGAACTACAGGGATTCATCCTGCAGATCGAAGTCTCCTGTTTCGTGGCGTAGGATTGCGCATGGCTCGCTGTGGTTTAGGGTCATTTTTTATGGTTGGAGGTTACTATTTGATTATTGATCATTTGTTGAAATGA 2622 43.14 MLAMEKDFDAKLMIQSNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYTSLKNHPFFEGVDWNNIRAQTPPRLALEAGSHSNENDDGSESSWNPSHVGDGASRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNRMLKMDEFLKNQIFATHAVAATGSVTLSTVLTYPLDTIKTLIQVGSDPLGSGKQLTITQALQRIRSFSGNSGLYSGFGWLAFGRLFGIGARFGIYEIVTAFYKDGREDDYVHVSEALLAGLMAGAAESLICSPFELVKLRAQVTSAVRLPSPSSLVGQERALAPSMSRFLLRYTLDQKALNHSVGLLSTLTTKHPNIKGALLEYPWMMTGSGRPPAVSNVHRPSDIISLEGWQAFWRGLRSGIARDSIFSGVFFSTWQFLHQSMLIWKSIEMDPPPRSNDEVGPLSPFSVSLAAGFSGAVAAAASHGFDTAKSRSLCTVLPKYVVMERKYLKWRRPGNRFERTTGIHPADRSLLFRGVGLRMARCGLGSFFMVGGYYLIIDHLLK 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31573839 31585708 + CaPI482276_05g023500.1 Cam05g2350 127754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2350 873 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 325 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cam05g2350 873 FunFam 3-phosphoinositide-dependent protein kinase 2-like 128 326 - -
Cam05g2350 873 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2350 873 MobiDBLite consensus disorder prediction 330 372 - -
Cam05g2350 873 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Cam05g2350 873 Gene3D Mitochondrial carrier domain 503 873 IPR023395 -
Cam05g2350 873 FunFam 3-phosphoinositide-dependent protein kinase 1 359 489 - -
Cam05g2350 873 SMART serkin_6 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2350 873 SUPERFAMILY PH domain-like 305 490 - -
Cam05g2350 873 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Cam05g2350 873 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2350 873 MobiDBLite consensus disorder prediction 338 372 - -
Cam05g2350 873 Pfam PH domain 386 489 IPR033931 -
Cam05g2350 873 SUPERFAMILY Protein kinase-like (PK-like) 41 359 IPR011009 -
Cam05g2350 873 CDD STKc_PDK1 42 311 IPR039046 GO:0004674(InterPro)
Cam05g2350 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g2350 873 FunFam 3-phosphoinositide-dependent protein kinase 2-like 42 127 - -
Cam05g2350 873 Coils Coil 469 489 - -
Cam05g2350 873 Gene3D - 357 494 IPR011993 -
Cam05g2350 873 SUPERFAMILY Mitochondrial carrier 503 863 IPR023395 -
Cam05g2350 873 ProSiteProfiles Solute carrier (Solcar) repeat profile. 500 589 IPR018108 -
Cam05g2350 873 Pfam Mitochondrial carrier protein 502 591 IPR018108 -
Cam05g2350 873 Pfam Mitochondrial carrier protein 600 635 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2350 Cam-Chr5:31573839 Cam06g1807 Cam-Chr6:29158078 3.10E-54 dispersed
Cam06g1667 Cam-Chr6:28057443 Cam05g2350 Cam-Chr5:31573839 2.60E-07 dispersed
Cam05g2350 Cam-Chr5:31573839 Cam02g0326 Cam-Chr2:3996590 8.50E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85211 PF00069 Pkinase 4.80E-65 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2350 K06276 - csv:101212874 941.414