Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2389 ATGGGGGTGCCTGCAACTGCAACTTTGGGGGATGATTTTCTGAGAGAAAGAGCGGCTAAGATGAGAGAATCACTGCAAAAGAGCCAAACTATTACTGATAACGTTGTCACCATTCTCGGTTCCTTTGACCACCGTCTTTCAGCTCTCGAAACCGCCATGCGCCCTACTCAGATCAGAACCAATTCTATTCGTAAAGCTCACGAGAATATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCTATTGGTCAGTTAAGAAACATTATCAAATTCTTTAGTAGCCATAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAGGCAAATACGCTGCTTGCAAAAGCCATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGCAAACCTGTGGAGCCTGAGCGTCTTTTCGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCATGATTCAGGTGGAAAGAATCACTCCTCAAATCCTCATTCTGCACATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCACTCTCATACCACCACGTGTTCTACCACTGCTGCATGATTTATCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAATCTACAGGGATACCCGTTCAGTCGTTCTGGAAGAAAGCCTACGGAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTATTTGCTGGTGAACGAAAAGTTTGCGATCAAATATTTGAAGGCTTTGAATCGCTTAGAGACCAATCATTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTCGGGGAGGCGATTGCAAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTTTGGACATGTATGAAATTATGCGAGAGCTTCACTCCGAGATAGAGACGATTTTTAAGGGTAAAGCATGCAATGAGATCAAGGAATCTGCATCGGGTTTGACCAAACGGCTTGCTCAGACAGCTAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAACTTTTTCAAGAATTTGAAGATAGTGGTCAAACGAATTCGGAATTGGCCACCGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGATGGAAAATCTAAGCATTACAGAGACCCTGCTTTGACTCACTTATTCCTCATGAACAACATTCACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGGTCGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATTCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCTGGTATAGATGGAGGAAATAGTAGCGGAGTTTCTAAGGCGCTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCCGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTTGGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAGCCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAAGGGAAGAACTTGAGTGAACCTAAGCGGTAG 1962 42.25 MGVPATATLGDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANTLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGHDSGGKNHSSNPHSAHHDNSLETAVYTPPTLIPPRVLPLLHDLSQQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACNEIKESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTNSELATVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31922780 31930252 - CaPI482276_05g023890.1 Cam05g2389 127793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2389 653 MobiDBLite consensus disorder prediction 173 201 - -
Cam05g2389 653 Pfam Exo70 exocyst complex subunit C-terminal 281 640 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cam05g2389 653 PANTHER EXOCYST COMPLEX PROTEIN EXO70 17 646 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cam05g2389 653 FunFam Exocyst subunit Exo70 family protein 88 651 - -
Cam05g2389 653 Pfam Exocyst complex component Exo70 N-terminal 73 155 - -
Cam05g2389 653 Gene3D Exocyst complex component Exo70 78 653 - -
Cam05g2389 653 MobiDBLite consensus disorder prediction 171 201 - -
Cam05g2389 653 SUPERFAMILY Cullin repeat-like 80 644 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1543 Cam-Chr1:28988056 Cam05g2389 Cam-Chr5:31922780 7.60E-276 dispersed
Cam04g0872 Cam-Chr4:22871921 Cam05g2389 Cam-Chr5:31922780 6.10E-46 dispersed
Cam05g2389 Cam-Chr5:31922780 Cam07g1113 Cam-Chr7:25623771 9.30E-104 dispersed
Cam05g2389 Cam-Chr5:31922780 Cam02g2134 Cam-Chr2:34116291 6.70E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2389 K07195 - csv:101206262 1221.07