Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2409 ATGAACTCAGTTCCATTCATTTGCCTTCTCCTTCTCTCTCTCCTTCTCGCCGGAGCTTCCGATTCTTCTCCGCCGTCTACCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCATCCATCCGGTTCTCCCCCTCCGATCCATACGGCTACGGGAAATTCTCCGTCAAGAAATGTCTCAAACAAGCGATCAAAATGTCGAGCGTAATCAGCGACTATCTCGACCGAGGACGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGAATGACTGCAGAGAACTTTCCGATTTGAATGTGGAGTTTCTTCGGTCGATCCAGGGCGTATTGGAGGCGGCGGAGGGCGTCGATGAGGAGCTGGTGGAGCGCGTTGAGAGTATTCTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGATGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGTCGAGCGCCGGAGAGCTGTACAGTGTGTCATTGGGATTGGTTTCGAACTCGCTGTCGCGACGGTGGAAGAAGCGGCGGCAGAAGGGAAATGGAGATGGAGGGAATTTTCCGGCGGGTGCGCGGAGCAGAGAGCCATTGAACACGCTGATCAAGGGACTACATAAAATGGGATCATGCAACAACCAATCCACAAAGTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCAGCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGACGCAATTGCATTTGCTCCCAACAACTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGAGAAGGATACTATGAAGAATACGTCGTCATCCCCAAATTCAAAACCAATGTAATGCTCATCGGAGACGGCATTAATCGAACCATCATCACCGGGAACCATAGCGTCGTCGATGGTTGGACGACTTATAACTCTTCAACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTAGCAGTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAAGGATATCAAGACACTCTTTATGTTCATTCCCTAAGACAATTCTATAGAGAATGTGACATTTATGGCACTGTAGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCCAGAAAGCCACTCCCCAACCAAAAAAATGCCTTCACCGCGCAGGGCCGAACCGATCCGAACCAAAACACAGGCATCTCGATCCACAACTGCAGCATCAAGGCTGCACCCGACTGGGCGATGGATTGGAATGCAACGACGATGACGACGAACTACCTCGGGCGACCGTGGAAACAGTACTCAAGGACAGTGTATATGCAGTCTTATATTGGGGATTTGATAAGCCCAGTGGGATGGTTGGAATGGAATGGAACAGTAGGATTAGAGACATTGTATTATGGGGAGTTTGAGAATTATGGACCAGGAGCTGACACAAGCTTGAGGGTGAATTGGCCTGGATATAGCTTGATGAATCTTACACAAGCTATGAATTTTACTGTCTATAATTTCACTATGGGAGATACTTGGCTGCCTTATACTGATATACCTTTCTCTGGAGGTTTGTTAATTATGTGA 1707 48.27 MNSVPFICLLLLSLLLAGASDSSPPSTALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVISDYLDRGRDSRLNQREAGALNDCRELSDLNVEFLRSIQGVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLSSAGELYSVSLGLVSNSLSRRWKKRRQKGNGDGGNFPAGARSREPLNTLIKGLHKMGSCNNQSTKCSGRKRLLTDLGSTGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVREGYYEEYVVIPKFKTNVMLIGDGINRTIITGNHSVVDGWTTYNSSTFTVCGDGFVAIDMTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCSIKAAPDWAMDWNATTMTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTVGLETLYYGEFENYGPGADTSLRVNWPGYSLMNLTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIM 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32086869 32093312 - CaPI482276_05g024090.1 Cam05g2409 127813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2409 568 CDD PMEI-like_3 28 179 - -
Cam05g2409 568 PANTHER PECTINESTERASE 8 555 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam05g2409 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Cam05g2409 568 FunFam Pectinesterase 244 565 - -
Cam05g2409 568 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Cam05g2409 568 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Cam05g2409 568 NCBIfam pectinesterase inhibitor domain 3 152 IPR006501 GO:0004857(InterPro)
Cam05g2409 568 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857(InterPro)
Cam05g2409 568 Gene3D - 244 565 IPR012334 -
Cam05g2409 568 Pfam Pectinesterase 250 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam05g2409 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
Cam05g2409 568 SUPERFAMILY Pectin lyase-like 245 564 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2409 Cam-Chr5:32086869 Cam09g0553 Cam-Chr9:5515843 3.40E-150 dispersed
Cam01g0651 Cam-Chr1:7169517 Cam05g2409 Cam-Chr5:32086869 8.10E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2409 K01051 - csv:101206112 1028.85