Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2410 ATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTATATTTGGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTCGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAACCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAGCAACAGCAACAGGATCAGCAACAACAACAACAAACGACATTCGCGGGCCCGCCTGACCTTCAGTTCTCGATCGAGAACAACCCGGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCGCTCGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1296 47.22 MRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKPSVLQAAEQAEDPNYSPASSEGEVVQQQQQDQQQQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32098728 32102688 - CaPI482276_05g024100.1 Cam05g2410 127814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2410 431 CDD AP2 84 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Cam05g2410 431 MobiDBLite consensus disorder prediction 1 70 - -
Cam05g2410 431 Pfam AP2 domain 85 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 Pfam AP2 domain 185 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 MobiDBLite consensus disorder prediction 262 306 - -
Cam05g2410 431 PRINTS Ethylene responsive element binding protein signature 226 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 MobiDBLite consensus disorder prediction 267 301 - -
Cam05g2410 431 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 302 - -
Cam05g2410 431 SMART rav1_2 84 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 SMART rav1_2 186 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 MobiDBLite consensus disorder prediction 380 397 - -
Cam05g2410 431 MobiDBLite consensus disorder prediction 377 397 - -
Cam05g2410 431 ProSiteProfiles AP2/ERF domain profile. 84 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 FunFam AP2-like ethylene-responsive transcription factor 83 152 - -
Cam05g2410 431 SUPERFAMILY DNA-binding domain 185 246 IPR016177 GO:0003677(InterPro)
Cam05g2410 431 SUPERFAMILY DNA-binding domain 83 152 IPR016177 GO:0003677(InterPro)
Cam05g2410 431 CDD AP2 185 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 Gene3D AP2/ERF domain 84 152 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2410 431 MobiDBLite consensus disorder prediction 1 40 - -
Cam05g2410 431 FunFam AP2-like ethylene-responsive transcription factor 185 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2410 Cam-Chr5:32098728 Cam06g1485 Cam-Chr6:26263428 2.40E-68 dispersed
Cam06g1404 Cam-Chr6:25467445 Cam05g2410 Cam-Chr5:32098728 4.90E-75 transposed
Cam09g0342 Cam-Chr9:3782107 Cam05g2410 Cam-Chr5:32098728 2.00E-72 transposed
Cam10g1193 Cam-Chr10:25336420 Cam05g2410 Cam-Chr5:32098728 3.00E-73 transposed
Cam10g1553 Cam-Chr10:29198638 Cam05g2410 Cam-Chr5:32098728 1.80E-50 transposed
Cam05g2410 Cam-Chr5:32098728 Cam08g1335 Cam-Chr8:19639220 8.70E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52010 PF00847 AP2 1.50E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2410 - - - 0.0