Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2435 ATGAAGGACCGCTCTCCTTCCTCCAATGGCGCTGTTTACGTCCCTCCTCACGTCCGTCTCCGCTCCGTCGCTACCCCTTCTTATAATTCCTCTGCTGTTTCCGCTGTTGACTGCAAGCTCAAGGCGGCTCCAGCCTCGCTGCTCGATTCAGGAACCACTGCTTCACCTTGCCTTCATGCTCGATCTGAAGAACTGCTTCCAACGGGGAACTCGCGTTTTAATTCCGTGCAGTATGATTCGGCCTACGACGATGGGACTCCTGTGGAGAGTTGGACTTGTAATTTCGAGTGTTCGCATCAATCGGGTTTTCAACCTTCTGTCAACATTGATTTGTGGAAAAGGAAGTTAGCATTACTTTTACGTGACAAGGAGAAGCAAGAGTTAATTTCAAGGGAGAAAAAAGATAGACAAGACTTTGAGGAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTATTTAGTAAGGTCCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGAGAGGTCTCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTGGTAGAATTTCTCTCTCACAAGTCTATGCATAAAGGTTTTCAAGATATTTCCGTCTCTAGATCAAGCAGCGGTGGTAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACAAGCATCTAGTAAGGCTGTAATGGAAAAAATTCTTTGGAGGAGAAGTTCACATCTGCGTGATCAACAGCAGGCTTGGCAGTCATCTCTTGAAGGAAGAGAAATGCTGGAATTTCGGAAAAATCTCCCTGCTTACAAGGAGAAGGATGCATTATTGGCCACAATCTCAGAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAGTTCATTTTGGAATCAGAAATAGAATCACTCCGTGGGGCTGTTTGCAGCATCATATGTACACAGCCAAGACGAATATCTGCCATGTCTGTCTCTGAGAGAGTTGCTTCTGAAAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACCACGGGTATCTTGTTGAGAAGATTGCTTGTTGATAGAAATTTGAAAGGCATAACTCACGTCATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCACATTCCGGGATTCACACACCCTGTCCAAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTGACTCCATACAATCAAATAGATGACTATGGTCAAGAGAAGACATGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCCACTGTTCAGGATGCACTTATGGCAGCTGATTTTAAGGAGTACAGTCTTCAAACTCAGGAGTCCTTATCGTGTTGGAATCCAGACTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTCAGGATATGCGAGAGTGAAACACCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTGAAGGAGAAACTCCAGTCTCATCCTTTATTAGGAGATCCGAGTCGTGTCATGTTGTTGGCGTGCCATGGCTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTACTGAACCTGACGAAGGAGTGAGGAAGGTAGTGCTTGCAACAAATATTGCCGAGACAAGTATCACGATAAATGATGTTGTGTATGTTCTGGACTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCGTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGTTACCATCTATACCCTAGGTGTGTGTTTGGTTCTTTCTCTGAGTATCAGCTACCAGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCTTAAGGCTCGGAAGTATATCAGAGTTTCTATCTCGGGCTTTGCAATCACCAGAGCTACTAGCGGTTCAGAATGCTATTGAATATTTGAAGATGATTGGAGCATTTGATGAGAGTGAAAATCTTACTGTTTTAGGTCGTTATTTGACTATGCTCCCAATGGAGCCAAAACTGGGAAAGATGTTGATAGTAGGTGCTATCTTCAATTGTTTGGATCCAATTTTGACCATTGTTGCTGGCCTCAGTGTGAGAGACCCTTTTCTAATGCCACTTGAGAAGAAGGATGCTGCAGAGGCTGCAAAATCTAAATTTTCACAAGATCATAGTGATCACCTTGCTATTATCCGGGCTTATGGGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGGATATGACTTCTGTTGGAAGAACTTCCTTTCTGTACAATCGATGAAGGCTATTGATTCACTAAGGAAGGAGTTTTTTTCTTTGCTTAGAGATACTGGCTTGGTTGATGGGTACTCAGACAACTACAATGCTTGGAGTCTTGATGAACAACTTATACGTGCAGTTATTTGCTATGGCCTTTATCCTGGAGTTTGCTCCGTTGTGCATAATGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTCCTCTATTCGAACTCAGTCAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTTAATGAGAAGATTAAAGTGAACTCCATTTTCCTTCGAGATTCAACAGCCATCTCTGACTCAATGTTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCATGAGGGACACCTGAAAATGTTGGGTGGTTTTTTGGAATTTTTTATGAAACCTGATGTAGCAGAGACATATCAGAAATTGAGAATGGAACTTGAAGAGCTTATACAGAAGAAGCTGCTAAATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTCGTTTTTGGCCGCCAGATCCTTCAGCAACCCTTCAAGACGTCAGCTCCTGCAGCAGCACCAACTGCTGTTTCAAGAATTGAAAGTGGACCTGGTGGTGACAATTCTAAGAGTCAGCTCCAGACTTTACTCACGAGAGCTGGATATGCTGCACCCATCTATAAGACTAAGCAATTGAAGAACAATCAATTCCGAGCAACCGTGGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCAGAAAAGGATGCAGCAGCTGAGGCTCTTGAGTGGTTGATGGGTGGAAATCAGACAGGGCACGACTATGTCAACCAAATGTCTATGATGCTAAAAAGGAGCAAGAAGGATCATAACTAA 3519 43.14 MKDRSPSSNGAVYVPPHVRLRSVATPSYNSSAVSAVDCKLKAAPASLLDSGTTASPCLHARSEELLPTGNSRFNSVQYDSAYDDGTPVESWTCNFECSHQSGFQPSVNIDLWKRKLALLLRDKEKQELISREKKDRQDFEEIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLLRRVDEHLVEFLSHKSMHKGFQDISVSRSSSGGSIATDEGLFEQPEPQASSKAVMEKILWRRSSHLRDQQQAWQSSLEGREMLEFRKNLPAYKEKDALLATISENQVIIISGETGCGKTTQVPQFILESEIESLRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVQTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASTVQDALMAADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVRICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPSRVMLLACHGSMASSEQRLIFTEPDEGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPELLAVQNAIEYLKMIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTIVAGLSVRDPFLMPLEKKDAAEAAKSKFSQDHSDHLAIIRAYGGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYSDNYNAWSLDEQLIRAVICYGLYPGVCSVVHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDHEGHLKMLGGFLEFFMKPDVAETYQKLRMELEELIQKKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFVFGRQILQQPFKTSAPAAAPTAVSRIESGPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGNQTGHDYVNQMSMMLKRSKKDHN 1172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32295802 32307505 - CaPI482276_05g024350.1 Cam05g2435 127839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2435 1172 Pfam Helicase conserved C-terminal domain 547 675 IPR001650 -
Cam05g2435 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 716 IPR001650 -
Cam05g2435 1172 SMART ultradead3 276 464 IPR014001 -
Cam05g2435 1172 Pfam DEAD/DEAH box helicase 288 439 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cam05g2435 1172 FunFam DExH-box ATP-dependent RNA helicase DExH3 1062 1151 - -
Cam05g2435 1172 SUPERFAMILY dsRNA-binding domain-like 1079 1161 - -
Cam05g2435 1172 Pfam Helicase associated domain (HA2), ratchet-like 768 826 - -
Cam05g2435 1172 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 894 976 IPR011709 -
Cam05g2435 1172 PANTHER ATP-DEPENDENT RNA HELICASE 238 1079 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Cam05g2435 1172 Pfam Helicase associated domain (HA2), winged-helix 739 766 IPR048333 -
Cam05g2435 1172 SMART helicmild6 570 676 IPR001650 -
Cam05g2435 1172 Pfam Double-stranded RNA binding motif 1085 1146 IPR014720 -
Cam05g2435 1172 Gene3D - 232 456 IPR027417 -
Cam05g2435 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 455 IPR014001 -
Cam05g2435 1172 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1083 1148 IPR014720 -
Cam05g2435 1172 Gene3D - 541 694 IPR027417 -
Cam05g2435 1172 FunFam Putative ATP-dependent RNA helicase DHX36 718 822 - -
Cam05g2435 1172 SMART DRBM_3 1084 1147 IPR014720 -
Cam05g2435 1172 Gene3D - 718 828 - -
Cam05g2435 1172 SMART ha2_5 738 828 IPR007502 -
Cam05g2435 1172 FunFam DExH-box ATP-dependent RNA helicase DExH3 538 694 - -
Cam05g2435 1172 CDD SF2_C_RHA 459 684 - -
Cam05g2435 1172 Gene3D - 1068 1150 - -
Cam05g2435 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 841 IPR027417 -
Cam05g2435 1172 CDD DEXHc_RHA-like 294 454 - -
Cam05g2435 1172 FunFam DExH-box ATP-dependent RNA helicase DExH3 231 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2435 K14442 - - csv:101208774 2157.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2412 Cam-Chr5:32113548 Cam05g2435 Cam-Chr5:32295802 0.00E+00 dispersed
Cam05g2435 Cam-Chr5:32295802 Cam10g1789 Cam-Chr10:31991993 2.10E-239 dispersed
Cam10g1069 Cam-Chr10:23457747 Cam05g2435 Cam-Chr5:32295802 1.50E-39 transposed
Cam05g2435 Cam-Chr5:32295802 Cam06g1595 Cam-Chr6:27421547 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70