Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2453 ATGGTGTCAAATCTCTCCATTTTCATTTTCATTTTCATCTTCCTGTCGCCCGAAACATCCACCCCCTCAGCCGCCGCCGACTACCACTTCGAGGCCTGCCAGCGGCGGATGTCCTGCGGCGACAACCAGACAATTCAATACCCATTTTACATCCATAATCGCCAAGATCCGTTTTGTGGGTACCCGGGATTTAAGCTGAAATGTCATCAAAACGGCCACCCGATCCTCCGTCTCGCTGGCCGAGACTTTTCCGTCCGCCGTATTTCATACGAAAATCACTTCCTCCGCCTCTCCGACCACGCCATTTCAACAGCCTCTGAGTGTAGTCCTTTGATTCGAAACCTCTCTGTTCTGCCTAACGAAGGGTTCCACCTCGCCGCTGGGCAGGGCGGCATTTGCGACAGAGAGGAAAGCCGGGAAGAGGCTGAGGAAAATGGGTTGGTGGTGGAATGGACAGCCGGAGAGTGTAAATTCTGCAACAACAGCGGTGGGTTCTGTGGATTTGATAGTTCGACTCATTTGTTCAAGTGTTATTGTCGAGATCGACCCCATGCTTTTCATTGTACTCCGCCTCCGCCAGATAAACGTAACATTTTGTGGATTGCACTAGGTGCTGGATTCTCAGGCGTAATTTTGCTTGTCTTGTTATTTGCTCTTTGGTACCGTAGAAGAAGGCGGGCTGCTCCAAACATCATAACAAGGAATTTATCTTGTGAACCCTACTCAAAATTTGACTTGGATGATGGTGGTGGTGTGTGCTTTGAAGTCCCTGTTTTCTCATACGTCGAACTTGAAGCGGCCACTAACAAATTTGATCGTGATAAAGAACTTGGAGATGGTGGTTTTGGAACCGTGTACCATGGCAAACTCCATGATGGTCGGGAAGTTGCTGTGAAACGCCTTTATCAACATAACTATAGACGAGTAGAGCAATTCATGAATGAGGTTAAAATTCTCACCCGTCTTCGCCATAAAAATCTTGTCTCCCTTTACGGATGTACTTCAAGGCGCAGTCGTGAACTTCTCCTTGTTTATGAATTTGTCCCAAATGGTACTGTTGCTGATCATCTCCATGGAGAACAAGCAAGTTCCAGCTTGCTCACGTGGCCTATTCGGATGAACATTGCCATTGAAACAGCAAGTGCTCTAGTTTATCTCCATGCTTCGGATATCATTCATCGTGATGTGAAGACTACTAACATTCTCTTAGACAACAATTTTTCTGTCAAAGTTGCTGATTTTGGGATCTCTAGATTATTCCCAAACGATGTTAGTCATGTCTCAACTGCTCCTCAAGGGACCCCTGGTTATGTGGATCCCGAGTATTACCAATGTTATCAGCTTACAACCAAGAGTGATGTTTATAGTTTTGGTGTCGTATTAATCGAGCTTATATCGTCAATGCCAGCTGTTGATATAACAAGGCATCGACATGAGATTAACTTGTCTAACTTAGCTGTGAACAAAATTCTAAGACAGGAAATTGACGAGCTGATTGATCCATGTCTCGGGTATCAATCTGATAAAAATGTTCGACGGATGATAATGGCAGTGGCTTGGCTAGCTTTTCTATGTCTGCAGCAAGACAAGGAAAGAAGACCTACAATGGAAGAAGCCTTGGAATCTTTGAAGAGGATTGAGAGTGGGGAAGAAAGTGAGAATTTGCAAGATAATAGTGCACTGTTGAAGAGCTTTGACCCATCTCCTTCTCCAGAGTATGATGAGATTCAGTTGTTGAAGAACAAGAGGCAGCAGTTGTCCCCTACTTCTGTTGCTGATAAATGGATCAGCTCAACTTCATTTGTCAGTGCTTCAACTTCAATATCATCTCTCTCTTAA 1839 44.86 MVSNLSIFIFIFIFLSPETSTPSAAADYHFEACQRRMSCGDNQTIQYPFYIHNRQDPFCGYPGFKLKCHQNGHPILRLAGRDFSVRRISYENHFLRLSDHAISTASECSPLIRNLSVLPNEGFHLAAGQGGICDREESREEAEENGLVVEWTAGECKFCNNSGGFCGFDSSTHLFKCYCRDRPHAFHCTPPPPDKRNILWIALGAGFSGVILLVLLFALWYRRRRRAAPNIITRNLSCEPYSKFDLDDGGGVCFEVPVFSYVELEAATNKFDRDKELGDGGFGTVYHGKLHDGREVAVKRLYQHNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSRRSRELLLVYEFVPNGTVADHLHGEQASSSLLTWPIRMNIAIETASALVYLHASDIIHRDVKTTNILLDNNFSVKVADFGISRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVNKILRQEIDELIDPCLGYQSDKNVRRMIMAVAWLAFLCLQQDKERRPTMEEALESLKRIESGEESENLQDNSALLKSFDPSPSPEYDEIQLLKNKRQQLSPTSVADKWISSTSFVSASTSISSLS 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32426201 32431606 + CaPI482276_05g024530.1 Cam05g2453 127857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2453 612 ProSiteProfiles Protein kinase domain profile. 271 546 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2453 612 Pfam Protein kinase domain 272 541 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2453 612 SMART serkin_6 271 546 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2453 612 Pfam Wall-associated receptor kinase galacturonan-binding 33 99 IPR025287 GO:0030247(InterPro)
Cam05g2453 612 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 139 599 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cam05g2453 612 MobiDBLite consensus disorder prediction 547 573 - -
Cam05g2453 612 SUPERFAMILY Protein kinase-like (PK-like) 256 572 IPR011009 -
Cam05g2453 612 Pfam Wall-associated receptor kinase C-terminal 135 182 IPR032872 -
Cam05g2453 612 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524(InterPro)
Cam05g2453 612 FunFam Wall-associated receptor kinase-like 20 348 556 - -
Cam05g2453 612 Gene3D Phosphorylase Kinase; domain 1 250 347 - -
Cam05g2453 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g2453 612 Gene3D Transferase(Phosphotransferase) domain 1 348 567 - -
Cam05g2453 612 CDD STKc_IRAK 277 546 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2453 Cam-Chr5:32426201 Cam07g1500 Cam-Chr7:29635599 5.10E-128 dispersed
Cam11g0777 Cam-Chr11:9756761 Cam05g2453 Cam-Chr5:32426201 3.70E-130 wgd
Cam04g1121 Cam-Chr4:25310468 Cam05g2453 Cam-Chr5:32426201 1.30E-150 wgd
Cam05g2453 Cam-Chr5:32426201 Cam06g1607 Cam-Chr6:27529374 5.80E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85215 PF00069 Pkinase 9.60E-50 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2453 - - - 0.0