Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2454 ATGGCTTCCAGAGAAGGGAGACGCCATCATCAGAATCTGGTGCCGCTTGCTGCTTTGATCAGTAAAGAGCGAGTTCCCGGGAACCCTTCATCCACTTTCTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTACACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATTGATGGATGGACGGTGACAGTAGCGTCAGTTGGAGATTCCCGTTGCATTTTGGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATCGTTGGTGGTGCTGAGATCGGCCCACTCCGTTGTTGGCCTGGAGGCTTATGCCTTTCTCGATCCATTGGAGATATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAAGGCAGGCGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGATGCTTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGGTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTTTCAGCTATCGGTTTCGTGGAAGAATTATTCGAAGACGGCTCTGCCATGCTGGCAGAAAGGCTTGGAACAGTAGAGTTGAGTGGATCTGGACATGGCACGCCCAGCCTGTTCACTTGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGTCCCAGCGGGGGTACTTTGGATCTTTATTTGGAGGTTGTTAATCAAGTGGTTGATATTCGAAATCTCATGAACTCTTTCCGTTCGGTAACTTTTCAGCATGTTCCTAGGTACCATAATCAGGCCACACATTCTTTGGCCTGTGAAGGGTTGTTGGGATTGAACCAGCTAAGGCTCAACTCTTTCCCATCTGATTTAGAGGGATTGTTGAGATCTGAGCTTTTCTTTTTAAGTAATCCTGTTGCTTTGTATTATGCCTTGTTGTGGTTTGTGTAA 1440 46.32 MASREGRRHHQNLVPLAALISKERVPGNPSSTFSVFAIFDGHNGNAAAIYTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSKAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGGTLDLYLEVVNQVVDIRNLMNSFRSVTFQHVPRYHNQATHSLACEGLLGLNQLRLNSFPSDLEGLLRSELFFLSNPVALYYALLWFV 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32438797 32444735 + CaPI482276_05g024540.1 Cam05g2454 127858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2454 479 Gene3D - 1 271 IPR036457 -
Cam05g2454 479 PANTHER PROTEIN PHOSPHATASE 18 263 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam05g2454 479 SUPERFAMILY PP2C-like 30 264 IPR036457 -
Cam05g2454 479 CDD PP2Cc 26 264 IPR001932 -
Cam05g2454 479 ProSiteProfiles PPM-type phosphatase domain profile. 19 264 IPR001932 -
Cam05g2454 479 SMART PP2C_4 6 262 IPR001932 -
Cam05g2454 479 Pfam Protein phosphatase 2C 28 249 IPR001932 -
Cam05g2454 479 SMART PP2C_SIG_2 9 264 IPR001932 -
Cam05g2454 479 FunFam probable protein phosphatase 2C 5 10 269 - -
Cam05g2454 479 Pfam Reverse transcriptase-like 403 435 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1766 Cam-Chr3:32743355 Cam05g2454 Cam-Chr5:32438797 2.60E-154 dispersed
Cam05g2179 Cam-Chr5:30163512 Cam05g2454 Cam-Chr5:32438797 8.50E-130 dispersed
Cam05g2454 Cam-Chr5:32438797 Cam05g0653 Cam-Chr5:5650384 7.50E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2454 - - - 0.0