Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2471 ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA 615 54.15 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32570619 32572240 + CaPI482276_05g024710.1 Cam05g2471 127875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2471 204 MobiDBLite consensus disorder prediction 151 186 - -
Cam05g2471 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 162 - GO:0010468(PANTHER)
Cam05g2471 204 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cam05g2471 204 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1332 Cam-Chr5:14313134 Cam05g2471 Cam-Chr5:32570619 1.70E-52 dispersed
Cam05g2471 Cam-Chr5:32570619 Cam06g1623 Cam-Chr6:27689349 8.90E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52013 PF03195 LOB 5.90E-23 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2471 - - - 0.0