Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2500 ATGGATTTCCTTCATAATTTTCTGGATATTCGAGTAGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCTATTGAATCTTGCCGGCAACAGTTATCTGGAGTGTCGACAGAGAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAATTTATTCCGATTAACAAACCTTCTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGAGAAAATTGAATTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAGTCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCATCGGTTGTTGAGGTCAAAAAGAATGTCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAACTCCATTGAAAACAGAGTCAGTGGTCGTCGGTAAATCGGACGGTTCTTCGCCAATTCCGGAGGCGACGACGAGTTCGACGGCGGAAACCGCCTCCAAAGGTGGCGGTGGAACCAGTAAACGAGAAGATAAGGAGTCCCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCACGTTGCTACACCAAAACAAATCCGAGAGTTAATGAAGGTCGATGGACTCACTAACGACGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGGCGACGGCAGCGAAAACGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGGAAGGCGAGCCACAGTGGGGGAGTGGTTCATTCTAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGGCGTAG 1074 50.93 MDFLHNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIESCRQQLSGVSTESSEHTSSDGPVLEEFIPINKPSVNSHFEIEEDEQSKPEKIELGRSDWLKSAQLWNQSPDPPVTEDVAKETTSSVVEVKKNVGGGAFQPFQKEKTTPLKTESVVVGKSDGSSPIPEATTSSTAETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATAAKTRNGIYAPVATAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32823814 32825267 - CaPI482276_05g025000.1 Cam05g2500 127904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2500 357 Gene3D - 205 262 - -
Cam05g2500 357 MobiDBLite consensus disorder prediction 191 211 - -
Cam05g2500 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cam05g2500 357 MobiDBLite consensus disorder prediction 159 211 - -
Cam05g2500 357 FunFam Myb family transcription factor 205 263 - -
Cam05g2500 357 MobiDBLite consensus disorder prediction 159 189 - -
Cam05g2500 357 MobiDBLite consensus disorder prediction 333 357 - -
Cam05g2500 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677(InterPro)
Cam05g2500 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 326 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2500 357 Coils Coil 16 36 - -
Cam05g2500 357 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Cam05g2500 357 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cam05g2500 357 MobiDBLite consensus disorder prediction 320 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2500 Cam-Chr5:32823814 Cam11g0282 Cam-Chr11:4281503 7.00E-45 dispersed
Cam05g2500 Cam-Chr5:32823814 Cam08g0944 Cam-Chr8:14803287 7.90E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52016 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2500 - - - 0.0