Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2502 ATGGACGGTATTTGCATTGACGAAAGCACTTCCACTGAATCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTAGTTCTCGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGAAGACGACGCGGTTTCTGCCTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGGTTGGGATCGGAAACGAAACCGATCGTTATCCGGGTTAGATACGGACCCGGAAACCGCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTACAACCGGGTCCGACATGAACCCGGTTCAGACCGTGAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCACATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGAGCAATGTAA 1047 50.72 MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEEDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGWDRKRNRSLSGLDTDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTTTGSDMNPVQTVRLFGVDIIKVSPHSGCSEKRRRELEFLASQCTKKQRIVGAM 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32833227 32834273 - CaPI482276_05g025020.1 Cam05g2502 127906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2502 348 SMART rav1_2 60 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2502 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 314 IPR044800 GO:0003700(InterPro)
Cam05g2502 348 Gene3D - 176 302 IPR015300 -
Cam05g2502 348 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2502 348 FunFam AP2 domain-containing protein RAP2.8 59 116 - -
Cam05g2502 348 Pfam AP2 domain 59 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2502 348 SUPERFAMILY DNA-binding pseudobarrel domain 185 279 IPR015300 -
Cam05g2502 348 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2502 348 CDD AP2 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2502 348 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677(InterPro)
Cam05g2502 348 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677(InterPro)
Cam05g2502 348 MobiDBLite consensus disorder prediction 7 22 - -
Cam05g2502 348 ProSiteProfiles B3 DNA-binding domain profile. 187 292 IPR003340 GO:0003677(InterPro)
Cam05g2502 348 CDD B3_DNA 186 274 IPR003340 GO:0003677(InterPro)
Cam05g2502 348 MobiDBLite consensus disorder prediction 1 30 - -
Cam05g2502 348 SMART B3_2 187 292 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0127 Cam-Chr1:1580753 Cam05g2502 Cam-Chr5:32833227 6.80E-40 dispersed
Cam05g2502 Cam-Chr5:32833227 Cam06g0239 Cam-Chr6:4189233 6.60E-40 dispersed
Cam03g0994 Cam-Chr3:15998255 Cam05g2502 Cam-Chr5:32833227 1.30E-103 transposed
Cam03g1400 Cam-Chr3:28510572 Cam05g2502 Cam-Chr5:32833227 5.10E-43 transposed
Cam06g1364 Cam-Chr6:25088330 Cam05g2502 Cam-Chr5:32833227 3.00E-45 transposed
Cam03g0634 Cam-Chr3:7170605 Cam05g2502 Cam-Chr5:32833227 1.90E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52017 PF02362 B3 1.20E-27 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2502 K09287 - csv:101203784 628.632