Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g2506 | ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAACAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGGAGATCAGGGTTAATTTTTCCACCCGAAATCGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCGCCACCGCCACCGCCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTACCCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCATCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAGCTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTCTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA | 1083 | 41.83 | MCGEDQEEDHHQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFTRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32888067 | 32890541 | - | CaPI482276_05g025060.1 | Cam05g2506 | 127910 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g2506 | 360 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 148 | 353 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam05g2506 | 360 | SMART | finulus | 179 | 228 | IPR011598 | GO:0046983(InterPro) | |
Cam05g2506 | 360 | Pfam | Helix-loop-helix DNA-binding domain | 176 | 223 | IPR011598 | GO:0046983(InterPro) | |
Cam05g2506 | 360 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 177 | 228 | IPR036638 | GO:0046983(InterPro) | |
Cam05g2506 | 360 | FunFam | transcription factor bHLH30 | 168 | 231 | - | - | |
Cam05g2506 | 360 | CDD | bHLH_AtAIG1_like | 168 | 245 | - | - | |
Cam05g2506 | 360 | Gene3D | - | 168 | 229 | IPR036638 | GO:0046983(InterPro) | |
Cam05g2506 | 360 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 173 | 222 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1886 | Cam-Chr1:32374469 | Cam05g2506 | Cam-Chr5:32888067 | 7.40E-16 | dispersed | |
Cam02g1851 | Cam-Chr2:31567884 | Cam05g2506 | Cam-Chr5:32888067 | 9.10E-31 | dispersed | |
Cam05g2506 | Cam-Chr5:32888067 | Cam08g1628 | Cam-Chr8:22502189 | 1.50E-26 | dispersed | |
Cam06g1113 | Cam-Chr6:19193354 | Cam05g2506 | Cam-Chr5:32888067 | 9.20E-73 | transposed | |
Cam10g1313 | Cam-Chr10:26617262 | Cam05g2506 | Cam-Chr5:32888067 | 1.30E-39 | transposed | |
Cam11g0635 | Cam-Chr11:7880300 | Cam05g2506 | Cam-Chr5:32888067 | 1.70E-29 | transposed | |
Cam03g0658 | Cam-Chr3:7434677 | Cam05g2506 | Cam-Chr5:32888067 | 3.40E-33 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52019 | PF00010 | HLH | 5.70E-13 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g2506 | - | - | - | 0.0 |