Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2506 ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAACAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGGAGATCAGGGTTAATTTTTCCACCCGAAATCGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCGCCACCGCCACCGCCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTACCCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCATCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAGCTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTCTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA 1083 41.83 MCGEDQEEDHHQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFTRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32888067 32890541 - CaPI482276_05g025060.1 Cam05g2506 127910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2506 360 PANTHER TRANSCRIPTION FACTOR BHLH30 148 353 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g2506 360 SMART finulus 179 228 IPR011598 GO:0046983(InterPro)
Cam05g2506 360 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983(InterPro)
Cam05g2506 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 228 IPR036638 GO:0046983(InterPro)
Cam05g2506 360 FunFam transcription factor bHLH30 168 231 - -
Cam05g2506 360 CDD bHLH_AtAIG1_like 168 245 - -
Cam05g2506 360 Gene3D - 168 229 IPR036638 GO:0046983(InterPro)
Cam05g2506 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1886 Cam-Chr1:32374469 Cam05g2506 Cam-Chr5:32888067 7.40E-16 dispersed
Cam02g1851 Cam-Chr2:31567884 Cam05g2506 Cam-Chr5:32888067 9.10E-31 dispersed
Cam05g2506 Cam-Chr5:32888067 Cam08g1628 Cam-Chr8:22502189 1.50E-26 dispersed
Cam06g1113 Cam-Chr6:19193354 Cam05g2506 Cam-Chr5:32888067 9.20E-73 transposed
Cam10g1313 Cam-Chr10:26617262 Cam05g2506 Cam-Chr5:32888067 1.30E-39 transposed
Cam11g0635 Cam-Chr11:7880300 Cam05g2506 Cam-Chr5:32888067 1.70E-29 transposed
Cam03g0658 Cam-Chr3:7434677 Cam05g2506 Cam-Chr5:32888067 3.40E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52019 PF00010 HLH 5.70E-13 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2506 - - - 0.0